View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_16 (Length: 322)
Name: NF0876_low_16
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 31966717 - 31967000
Alignment:
| Q |
28 |
caaaaactacatgtgtattgattttcctatttttcccaaggatatgtaatnnnnnnnnnnnnnnncttcatctcccttatcaaattaaatataaaaacat |
127 |
Q |
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| T |
31966717 |
caaaaactaaatgtgtattgattttcctatttttcccaaggatatgtaaaataaataaataaaaaat-catctcccttatcaaattaaatataaaaacat |
31966815 |
T |
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| Q |
128 |
ttacttatctcatatttaatgtaaatgattattgtttatgtctattatttcattttgtataaaataaatactattaaaagtattataattcttatgcatt |
227 |
Q |
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| T |
31966816 |
ttacttatctcatatttaatgtaaatgattattgtttatgtctattatttcattttgtataaaataaatactattaaaagtattataattcttatgcatt |
31966915 |
T |
|
| Q |
228 |
taattataggacaattgtttcaaatgggcactgtagggagataacactttcccaactcttaatcgattttttaattggatctctg |
312 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31966916 |
taattataggacaattgtttcaaatggacactgtagggagataacacattcccaactcttaatcgatttttgaattggatctctg |
31967000 |
T |
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