View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_19 (Length: 307)
Name: NF0876_low_19
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 623487 - 623220
Alignment:
| Q |
30 |
gaagtaaatatctatgatgaaatttttattgtagaatgttagagttaatgcatttcatcttttcaagttcaagatatctttctctgtcctttttggttca |
129 |
Q |
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| T |
623487 |
gaagtaaatatctatgatgaaatttttattgtagaatgttagagttaatgcatttcatcttttcaagttcaagatatctttctctgtcctttttggttca |
623388 |
T |
|
| Q |
130 |
tattagattttttccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtacatatttgacaaaaactgccaagg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
623387 |
tattagattttttccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtacatatttgacaaaaactgccaagg |
623288 |
T |
|
| Q |
230 |
atttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcatattttagcatctgtg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
623287 |
atttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcgtattttagcatctgtg |
623220 |
T |
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