View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0876_low_21 (Length: 287)
Name: NF0876_low_21
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 273
Target Start/End: Original strand, 1117079 - 1117320
Alignment:
| Q |
32 |
ggaaggtttagacaaaagtagttgagtggtttgggtttgtggtgttttatcaaataatagcttgaaacatgcaagaaatccattttactatcttgcattt |
131 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1117079 |
ggaaggtttagacaaaagtagttgggtggtttgggtttgtggtgttttatcaaataatagcttgaaacatgcaagaaatccattttactatcttgcattt |
1117178 |
T |
|
| Q |
132 |
ggtctagcaatccataaacaatttgttttttaacagcatgaaattaatgaaggaacaataatcgatatggtaaaactcttattttaagcattgattaaat |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
1117179 |
ggtctagcaattcataaacaatttgttttttaactgcatgaaattaatgaaggaacaataatcgatatggtaaacctcttattttaggcattgattaaat |
1117278 |
T |
|
| Q |
232 |
ctaagaagaattacttggaagttggaactctctaccccttat |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1117279 |
ctaagaagaattacttggaagttggaactctctaccccttat |
1117320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 1095691 - 1095833
Alignment:
| Q |
107 |
aaatccattttactatcttgcatttggtctagcaatccataaacaatttgtttttta-acagcatgaaattaatgaa-ggaacaataatcgatatggtaa |
204 |
Q |
| |
|
|||||||||| | |||||||||||| |||||| || |||||| || ||||||||| || ||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
1095691 |
aaatccatttaattatcttgcatttagtctagagattcataaataaattgtttttttgacgacataaaattaatgaaaggaacaatcattgatatggtaa |
1095790 |
T |
|
| Q |
205 |
aactcttattttaagcattgattaaatctaagaagaattactt |
247 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||| |||| |
|
|
| T |
1095791 |
aactcttatcttgagcattgattaaatccaagaagaatgactt |
1095833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 1085416 - 1085513
Alignment:
| Q |
107 |
aaatccattttactatcttgcatttggtctagcaatccataaacaatttgttttttaacagcatgaaattaatgaaggaacaataatcgatatggtaa |
204 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| || |||||| |||||||||||| || |||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
1085416 |
aaatccatttgattatcttgcatttggtctagagattcataaataatttgtttttttacggcatgaaattaatgaaggaacaatcatcgttgtggtaa |
1085513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 1082777 - 1082874
Alignment:
| Q |
107 |
aaatccattttactatcttgcatttggtctagcaatccataaacaatttgttttttaacagcatgaaattaatgaaggaacaataatcgatatggtaa |
204 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| || |||||| |||||||||||| | |||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
1082777 |
aaatccatttgattatcttgcatttggtctagagattcataaataatttgtttttttaaggcatgaaattaatgaaggaacaatcatcgttgtggtaa |
1082874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 1099572 - 1099632
Alignment:
| Q |
32 |
ggaaggtttagacaaaagtagttgagtggtttgggtttgtggtgttttatcaaataatagct |
93 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1099572 |
ggaaggtttggacaaaagtagttgggtggtt-gggtttgtggtgttttatcaaataatagct |
1099632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 1099706 - 1099833
Alignment:
| Q |
120 |
tatcttgcatttggtctagcaatccataaacaatttgtttttta-acagcatgaaattaatgaaggaacaataatcgatatggtaaaactcttattttaa |
218 |
Q |
| |
|
|||||||||||||| |||| || |||||| | ||| |||||| || ||||||||||||||| |||||||| ||| |||||||||||| ||||| || |
|
|
| T |
1099706 |
tatcttgcatttgggctagagattcataaatagtttatttttttgacggcatgaaattaatga-ggaacaatcatcaatatggtaaaacccttatcttgg |
1099804 |
T |
|
| Q |
219 |
gcattgattaaatctaagaagaattactt |
247 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |
|
|
| T |
1099805 |
gcattgattaaatccaagaagaataactt |
1099833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 1095567 - 1095630
Alignment:
| Q |
32 |
ggaaggtttagacaaaagtagttgagtggtttgggtttgtggtgttttatc--aaataatagcttg |
95 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
1095567 |
ggaaggtttagacgaaagtagttg-gtgg-ttgggtttatggtgttttatcaaaaataatagcttg |
1095630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 8116171 - 8116316
Alignment:
| Q |
107 |
aaatccattttactatcttgcatttggtctagcaatccataaacaatttgtttttta-acagcatgaaattaatgaaggaacaataatcgatatggtaaa |
205 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| || ||||| |||| ||||||| || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8116171 |
aaatccatttgattatcttgcatttggtctagagattcataagtaattcgtttttttgacggcatgaaattaatgaaggaacaatcatcgatatggtaaa |
8116270 |
T |
|
| Q |
206 |
actcttattttaagcattgattaaatctaagaagaattacttggaa |
251 |
Q |
| |
|
| |||||| || ||||||||||||| ||||||||| |||||||| |
|
|
| T |
8116271 |
attcttatcttggtcattgattaaatccaagaagaatgacttggaa |
8116316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2857 times since January 2019
Visitors: 6167