View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_23 (Length: 276)
Name: NF0876_low_23
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16579348 - 16579577
Alignment:
| Q |
1 |
agaaattgaagaaaggagttaccaagtgtttttagagtaatggaataaatatatatgtagtattatagtgtttgtgatgaaaatgtgatgagaattgaga |
100 |
Q |
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| T |
16579348 |
agaaattgaagaaaggagttaccaagtgtttttagagtaatggaataaatatatatgtagtattatagtgtttgtgatgaaaatgtgatgagaattgaga |
16579447 |
T |
|
| Q |
101 |
agtgagaagaggaagaaatgttattatatatgattttatcactctctatgtatgtgtatatgattattaagtaagaactttccgtgtgtttcctttttag |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16579448 |
agtgagaagaggaagaaatgttattatatataattttatcactctctatgtatgtgtatatgattattaagtaagaactttctgtgtgtttcctttttag |
16579547 |
T |
|
| Q |
201 |
ttgtgttttggaatagaaaagatgatgatg |
230 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
16579548 |
ttgtgttttggaataaaaaagatgatgatg |
16579577 |
T |
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