View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_24 (Length: 260)
Name: NF0876_low_24
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_24 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 8687437 - 8687206
Alignment:
| Q |
29 |
agttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
128 |
Q |
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| T |
8687437 |
agttgtgtgcaatcgttccctggtcatagaatgagcaaaagagttgcgacgattaaggtgaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
8687338 |
T |
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| Q |
129 |
ctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcacccctt |
228 |
Q |
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| T |
8687337 |
ctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttattttatcacccctt |
8687238 |
T |
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| Q |
229 |
gtttgtccatgtatatacacatgttttctctt |
260 |
Q |
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| T |
8687237 |
gtttgtccatgtatatacacatgttttttctt |
8687206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 8675029 - 8675248
Alignment:
| Q |
29 |
agttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
128 |
Q |
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| T |
8675029 |
agttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
8675128 |
T |
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| Q |
129 |
ctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaac-tttaaatcataccttattttatcacc |
224 |
Q |
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| T |
8675129 |
ctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttattttatcacc |
8675228 |
T |
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| Q |
225 |
ccttgtttgtccatgtatat |
244 |
Q |
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| T |
8675229 |
ccttgtttgtccatgtatat |
8675248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 8693260 - 8693495
Alignment:
| Q |
29 |
agttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
128 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8693260 |
agttgtgtgcaatcgttccctggtcatagaatgagcaatagtgttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
8693359 |
T |
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| Q |
129 |
ctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccc |
225 |
Q |
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| T |
8693360 |
ctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcaccc |
8693459 |
T |
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| Q |
226 |
cttgtttgtccatgtatat-acacatgttttctctt |
260 |
Q |
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| T |
8693460 |
cttgtttgttcatgtatatgatacatgttttttctt |
8693495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 8696006 - 8695795
Alignment:
| Q |
29 |
agttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttg |
128 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
8696006 |
agttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaggtgaaggcgaagaatgttgcagaagttactagtaacgcacttg |
8695907 |
T |
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| Q |
129 |
ctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcacccctt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| |||||||| |||| |||||| || |
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| T |
8695906 |
ctttgtttcaaagttatgctacaaggtatcgacaagaagcagctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcacccttt |
8695811 |
T |
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| Q |
229 |
gtttgtccatgtatat |
244 |
Q |
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| T |
8695810 |
gtttgtccatgtatat |
8695795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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