View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0876_low_25 (Length: 259)

Name: NF0876_low_25
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0876_low_25
NF0876_low_25
[»] chr4 (29 HSPs)
chr4 (66-254)||(37179609-37179797)
chr4 (66-181)||(32055340-32055456)
chr4 (71-180)||(42370318-42370427)
chr4 (66-178)||(39827148-39827261)
chr4 (82-180)||(44690279-44690377)
chr4 (66-178)||(24369401-24369514)
chr4 (85-173)||(44670849-44670937)
chr4 (101-180)||(53737829-53737908)
chr4 (86-176)||(50343856-50343946)
chr4 (82-180)||(23016238-23016336)
chr4 (90-176)||(41468080-41468166)
chr4 (85-177)||(50774956-50775048)
chr4 (85-172)||(10095659-10095746)
chr4 (86-176)||(50086428-50086518)
chr4 (73-177)||(54700851-54700953)
chr4 (72-176)||(28005249-28005353)
chr4 (104-180)||(53919860-53919936)
chr4 (66-177)||(47560621-47560731)
chr4 (82-160)||(16822280-16822358)
chr4 (69-151)||(24324231-24324313)
chr4 (93-151)||(33982446-33982504)
chr4 (66-205)||(41370168-41370303)
chr4 (90-160)||(49144775-49144845)
chr4 (108-149)||(2063498-2063539)
chr4 (100-180)||(31871089-31871169)
chr4 (101-177)||(41956465-41956541)
chr4 (82-177)||(42956987-42957083)
chr4 (101-180)||(49446628-49446708)
chr4 (101-161)||(50115058-50115118)
[»] chr1 (32 HSPs)
chr1 (66-180)||(36321625-36321739)
chr1 (66-181)||(4521008-4521123)
chr1 (73-203)||(4771995-4772121)
chr1 (82-177)||(46370828-46370924)
chr1 (82-177)||(36621928-36622023)
chr1 (90-180)||(4039626-4039716)
chr1 (69-178)||(33744138-33744247)
chr1 (78-177)||(48811928-48812027)
chr1 (88-180)||(40570681-40570774)
chr1 (101-172)||(7481409-7481481)
chr1 (85-179)||(17112696-17112793)
chr1 (69-139)||(15549640-15549710)
chr1 (103-206)||(39973862-39973961)
chr1 (103-176)||(2633027-2633100)
chr1 (88-160)||(26322638-26322710)
chr1 (103-178)||(34445663-34445738)
chr1 (101-180)||(45584531-45584610)
chr1 (82-152)||(9221239-9221309)
chr1 (101-179)||(40203113-40203191)
chr1 (103-180)||(3047859-3047936)
chr1 (85-178)||(17554852-17554945)
chr1 (69-178)||(37705871-37705980)
chr1 (82-177)||(8836509-8836602)
chr1 (113-180)||(34861259-34861326)
chr1 (66-177)||(37976823-37976933)
chr1 (66-152)||(50670395-50670482)
chr1 (82-171)||(28672303-28672393)
chr1 (103-176)||(64863-64936)
chr1 (82-179)||(3755944-3756041)
chr1 (106-139)||(35438069-35438102)
chr1 (136-180)||(1048739-1048783)
chr1 (101-177)||(25302067-25302143)
[»] chr8 (29 HSPs)
chr8 (66-205)||(7513295-7513430)
chr8 (72-205)||(36348494-36348624)
chr8 (66-178)||(11077913-11078025)
chr8 (72-205)||(39093055-39093185)
chr8 (73-177)||(22209401-22209505)
chr8 (113-180)||(9460450-9460517)
chr8 (112-177)||(12782772-12782837)
chr8 (10-53)||(8642679-8642722)
chr8 (133-177)||(11993829-11993873)
chr8 (66-122)||(11995160-11995216)
chr8 (66-160)||(2445124-2445218)
chr8 (66-179)||(27055903-27056016)
chr8 (82-151)||(40949379-40949448)
chr8 (88-176)||(36924031-36924119)
chr8 (66-180)||(8108247-8108362)
chr8 (113-180)||(20279602-20279669)
chr8 (113-180)||(21066229-21066296)
chr8 (118-206)||(45368775-45368865)
chr8 (74-180)||(12002259-12002365)
chr8 (90-141)||(5217782-5217833)
chr8 (101-140)||(17521038-17521077)
chr8 (108-179)||(31264990-31265061)
chr8 (117-160)||(39333550-39333593)
chr8 (67-177)||(37167016-37167125)
chr8 (66-177)||(24103052-24103162)
chr8 (108-177)||(37564374-37564443)
chr8 (100-177)||(42760181-42760258)
chr8 (82-174)||(5293760-5293852)
chr8 (101-177)||(7528262-7528338)
[»] chr6 (6 HSPs)
chr6 (66-205)||(30509287-30509422)
chr6 (69-206)||(13070645-13070783)
chr6 (124-176)||(30250611-30250663)
chr6 (74-180)||(31702748-31702854)
chr6 (69-205)||(13070508-13070646)
chr6 (90-180)||(12383042-12383132)
[»] chr2 (30 HSPs)
chr2 (66-179)||(13811033-13811145)
chr2 (78-203)||(18223087-18223208)
chr2 (71-176)||(2825961-2826066)
chr2 (69-176)||(27133072-27133179)
chr2 (73-177)||(16717604-16717708)
chr2 (66-179)||(26408341-26408456)
chr2 (101-180)||(3882608-3882687)
chr2 (66-151)||(2888929-2889014)
chr2 (73-178)||(42924424-42924529)
chr2 (82-178)||(8964386-8964482)
chr2 (100-179)||(6761760-6761839)
chr2 (124-179)||(45076186-45076241)
chr2 (88-162)||(10824647-10824721)
chr2 (66-172)||(35312103-35312209)
chr2 (73-177)||(6797192-6797296)
chr2 (113-177)||(33275940-33276004)
chr2 (71-155)||(35477693-35477778)
chr2 (92-180)||(10204149-10204237)
chr2 (108-180)||(12075564-12075636)
chr2 (66-206)||(14102299-14102436)
chr2 (82-138)||(19495237-19495293)
chr2 (93-177)||(44941108-44941192)
chr2 (74-173)||(9153483-9153581)
chr2 (101-205)||(31513724-31513823)
chr2 (73-176)||(37617396-37617499)
chr2 (87-149)||(20128353-20128415)
chr2 (108-149)||(32859808-32859849)
chr2 (100-180)||(13538388-13538468)
chr2 (103-147)||(27948048-27948092)
chr2 (66-110)||(45303580-45303624)
[»] chr3 (28 HSPs)
chr3 (85-179)||(37708430-37708524)
chr3 (66-160)||(46711914-46712008)
chr3 (66-156)||(52309184-52309274)
chr3 (82-177)||(39400293-39400388)
chr3 (96-178)||(50217002-50217083)
chr3 (73-174)||(38457224-38457324)
chr3 (73-151)||(40546348-40546427)
chr3 (66-176)||(48322206-48322316)
chr3 (71-180)||(30082849-30082960)
chr3 (141-180)||(52309008-52309047)
chr3 (94-162)||(24658464-24658532)
chr3 (82-180)||(25461462-25461561)
chr3 (135-177)||(23642744-23642786)
chr3 (85-151)||(40392413-40392479)
chr3 (100-180)||(1511326-1511407)
chr3 (100-180)||(41571601-41571682)
chr3 (91-179)||(8703339-8703427)
chr3 (91-179)||(9055226-9055314)
chr3 (87-151)||(11404727-11404791)
chr3 (101-180)||(18399194-18399274)
chr3 (82-160)||(50368424-50368500)
chr3 (66-160)||(31901811-31901904)
chr3 (94-205)||(34758900-34759007)
chr3 (66-155)||(47115313-47115403)
chr3 (108-149)||(43803992-43804033)
chr3 (108-149)||(54290819-54290860)
chr3 (82-155)||(5504809-5504884)
chr3 (87-151)||(55110048-55110112)
[»] chr7 (18 HSPs)
chr7 (69-148)||(42890266-42890345)
chr7 (66-172)||(42911060-42911166)
chr7 (66-177)||(1360531-1360642)
chr7 (69-172)||(9533522-9533625)
chr7 (66-177)||(10031921-10032032)
chr7 (82-177)||(33887869-33887963)
chr7 (78-155)||(15995905-15995983)
chr7 (82-148)||(40065799-40065865)
chr7 (82-174)||(3256643-3256736)
chr7 (101-205)||(47507581-47507681)
chr7 (94-154)||(44719424-44719484)
chr7 (100-178)||(8920737-8920815)
chr7 (88-177)||(676395-676483)
chr7 (73-177)||(28733764-28733869)
chr7 (104-180)||(5248671-5248747)
chr7 (88-155)||(14574749-14574817)
chr7 (101-180)||(17157804-17157884)
chr7 (112-205)||(28770448-28770537)
[»] chr5 (26 HSPs)
chr5 (66-180)||(32017417-32017532)
chr5 (73-180)||(34032097-34032204)
chr5 (66-152)||(27833290-27833376)
chr5 (85-205)||(17098205-17098321)
chr5 (101-172)||(26663635-26663706)
chr5 (101-172)||(26935230-26935301)
chr5 (100-180)||(27016663-27016743)
chr5 (75-177)||(10145349-10145451)
chr5 (100-177)||(8761922-8761999)
chr5 (82-177)||(36160314-36160409)
chr5 (92-131)||(42338033-42338072)
chr5 (66-180)||(779078-779191)
chr5 (90-205)||(28793306-28793417)
chr5 (111-177)||(39382490-39382556)
chr5 (133-177)||(141867-141911)
chr5 (93-205)||(967074-967181)
chr5 (92-176)||(2816174-2816258)
chr5 (93-160)||(1354375-1354442)
chr5 (101-180)||(3263739-3263818)
chr5 (106-177)||(3758195-3758266)
chr5 (101-151)||(7210950-7211000)
chr5 (103-177)||(8247062-8247136)
chr5 (66-96)||(42337989-42338019)
chr5 (87-180)||(16161411-16161504)
chr5 (103-151)||(14042484-14042532)
chr5 (82-152)||(39099889-39099961)
[»] scaffold0009 (1 HSPs)
scaffold0009 (73-177)||(189064-189168)
[»] scaffold0291 (1 HSPs)
scaffold0291 (66-177)||(11664-11775)
[»] scaffold0111 (1 HSPs)
scaffold0111 (73-160)||(38917-39004)
[»] scaffold0011 (1 HSPs)
scaffold0011 (87-151)||(219211-219275)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 37179797 - 37179609
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||    
T  37179797 aaggactataaatagcaagtatttataaaaatacatataatcaatacattggaaatcgaaatgtttgacttttctaaaaaataattacttgttttggtat 37179698  T
Q  166 gcttaaagagtgcccgccccggagacactcgttaacaagatgatttctttattgtgtgtgatgaagttgtactaggttacgatgatatt 254  Q
    |||||||||||| |||||| |||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  37179697 gcttaaagagtgtccgccctggaggcactcgttaacaaaatcatttctttattgtgtgtgatgaaattgtactaggttatgatgatatt 37179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 32055340 - 32055456
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcg-aaatgtttaacttttttaaagaataattgcttgttttggta 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||| |||    
T  32055340 aaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaaatgtttgacttttctaaagaataattgcttgtttttgta 32055439  T
Q  165 tgcttaaagagtgcccg 181  Q
    |||||||||||||||||    
T  32055440 tgcttaaagagtgcccg 32055456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 42370318 - 42370427
Alignment:
Q  71 ctataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctt 169  Q
    |||||||||||||||||||||||||| | |||||||| ||| ||||| ||||  |||| ||| |||||| ||||||||||||||||||||||||||||||    
T  42370318 ctataaatagcaagtatttataaaaaatgcatgtaattaatgcattgaaaattaaaatattttactttt-taaagaataattgcttgttttggtatgctt 42370416  T
Q  170 aaagagtgccc 180  Q
    |||||||||||    
T  42370417 aaagagtgccc 42370427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 39827148 - 39827261
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgttttggta 164  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||  |||| |||| ||||| ||| || |||||||||||||| |||||||||||| ||    
T  39827148 aaggactataaatagtaagtatttataaaattacaagtaatcaatgaattgaaaattgaaatttttgacatttttaaagaataatttgcttgttttgata 39827247  T
Q  165 tgcttaaagagtgc 178  Q
    ||||||||||||||    
T  39827248 tgcttaaagagtgc 39827261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 44690279 - 44690377
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| |||||| ||||||| | ||||||| |||||||||| |||||||||||||||  |||||| ||| |||| ||||| |||||||||||||    
T  44690279 aagtatttatgaaaatatatgtaattattacattgaaaatcgaaatatttaacttttttaaaagataattacttattttagtatgtttaaagagtgccc 44690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 24369514 - 24369401
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggta 164  Q
    ||||||||||  ||| || |||||||||||| ||||| |||||| | | |||||||| ||||||||| |||||| ||||||||||||| || |||| |||    
T  24369514 aaggactatatgtagaaaatatttataaaaaatacatataatcagtgctttggaaattgaaatgtttgacttttataaagaataattgtttattttagta 24369415  T
Q  165 tgcttaaagagtgc 178  Q
    || |||||||||||    
T  24369414 tgtttaaagagtgc 24369401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 44670849 - 44670937
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 173  Q
    |||||||||||||| ||||||| | | |||||||||||||||| ||||| |||||||||  ||||||  ||||||| ||||||||||||    
T  44670849 tatttataaaaatatatgtaattattgcattggaaatcgaaatatttaatttttttaaaagataattatttgttttagtatgcttaaag 44670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 53737829 - 53737908
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||| ||||| |||||||||||||||| ||| | ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  53737829 tgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccc 53737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 50343856 - 50343946
Alignment:
Q  86 atttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||||| ||||||||| |||||||||||||| ||||  |||| ||| ||||||||||||||||||| ||| ||||   |||||||||||||    
T  50343856 atttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataattacttattttaaaatgcttaaagagt 50343946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 23016238 - 23016336
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||| ||||||||| |  ||||| ||||| |||||||||| ||||||||| |||| |||||| ||||||| |||  ||||| ||||| |||||||||||    
T  23016238 aagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaatgctcaaagagtgccc 23016336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 41468166 - 41468080
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    ||||||||||||||||||||| |||  ||||||| ||| ||||||||||||| |  |||||| ||| |||||| || ||||||||||    
T  41468166 ataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 50775048 - 50774956
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||| ||||||  |||||||||||  ||| ||||| |||| ||||||||||||||||||||||| ||| |||| | || |||||| ||||    
T  50775048 tatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttttaaagaataattacttattttagaatacttaaaaagtg 50774956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 10095659 - 10095746
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    ||||||||||||| |||||||||| | ||||| |||||||||| ||| | |||||||||  ||||||| || |||| ||||| |||||    
T  10095659 tatttataaaaatgcatgtaatcattgcattgaaaatcgaaatatttgatttttttaaaagataattgtttattttagtatgtttaaa 10095746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 50086428 - 50086518
Alignment:
Q  86 atttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||||| ||||||  |||| ||||| ||||| ||||| |||| ||| | |||||||||||||||||| || |||||| ||| |||||||||    
T  50086428 atttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 54700851 - 54700953
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||| ||| |||||||| ||||||| |||||||||| | | ||||||||| |||| ||| |||||||  |||||||||| ||| ||||   |||||||||    
T  54700851 ataagtagtaagtatttttaaaaatgcatgtaatcattgccttggaaatcaaaatatttgacttttt--aagaataattacttattttaaaatgcttaaa 54700948  T
Q  173 gagtg 177  Q
    |||||    
T  54700949 gagtg 54700953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 28005249 - 28005353
Alignment:
Q  72 tataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaa 171  Q
    ||||| ||| |||||||||| ||||||||| | || |  | ||| |||||| |||| ||| |||||||||||  |||||||||| |||| ||||| ||||    
T  28005249 tataagtagtaagtatttatgaaaatacatattattataaaattagaaatcaaaatatttgacttttttaaaagataattgcttattttagtatgtttaa 28005348  T
Q  172 agagt 176  Q
    |||||    
T  28005349 agagt 28005353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 53919936 - 53919860
Alignment:
Q  104 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||| ||| |||||| ||||| ||| ||||||||| |||||||||  || |||||  |||||||||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtgccc 53919860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 47560731 - 47560621
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    |||||| |||||||| ||||||| || ||||| | ||||||||||  |||  ||||| |||  ||| | ||||||||| ||||||||||| |||||| ||    
T  47560731 aaggaccataaatagtaagtattaatgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttgatttttttaaa-aataattgcttattttggaat 47560633  T
Q  166 gcttaaagagtg 177  Q
    | ||||||||||    
T  47560632 gattaaagagtg 47560621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 16822280 - 16822358
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||||||||| ||||| ||||||| |||||  |||||||| ||||| ||| | ||||| ||| ||||||||||| ||||    
T  16822280 aagtatttatgaaaatgcatgtaaacaatatcttggaaattgaaatatttgattttttaaaaaaataattgcttatttt 16822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 24324231 - 24324313
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    ||||||||| || ||||||||||||||||  |||||||| || ||||| ||||  |||| ||| | ||||||| |||||||||    
T  24324231 gactataaagagtaagtatttataaaaatgtatgtaatctatgcattgaaaattaaaatattttatttttttagagaataatt 24324313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 33982504 - 33982446
Alignment:
Q  93 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||||| |||||||||||  || |||||||||||| ||||||||||||| | |||||||    
T  33982504 aaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataatt 33982446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 41370168 - 41370303
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||| | ||||| |||| ||||| |||||   |||||||||| ||||| |||| ||||| |||||||||||| |  ||||||| |||  |||||  |    
T  41370168 aaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaatttggatt 41370267  T
Q  166 gcttaaagagtgcccgccccggagacactcgttaacaaga 205  Q
    |||||| ||||    || ||||| ||||||||||||||||    
T  41370268 gcttaatgagt----gctccggaaacactcgttaacaaga 41370303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 49144845 - 49144775
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    ||||||||| ||||||||||| ||| | ||||| |||| ||||||||||||| | ||||||| ||| ||||    
T  49144845 ataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttt 49144775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 2063539 - 2063498
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataa 149  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  2063539 aatacattggaaattgaactgtttgacttttttaaagaataa 2063498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 31871089 - 31871169
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||| ||| |||||| ||||| ||| ||||||||| | ||||||| ||| |||||  ||||||| | |||||||    
T  31871089 atgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttcttttgaaatgcttagaaagtgccc 31871169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 41956465 - 41956541
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||| | ||| |||| ||||| ||||| ||| |||||||||| || ||| ||||||  |||||||||||||    
T  41956465 tgtaatcaatgcgttgaaaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtg 41956541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 42956987 - 42957083
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||||||||||   |||||| ||| |||||||||| ||||| ||| | |||||| ||| ||||| ||||| |||| | ||| ||||||||||    
T  42956987 aagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttgatttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 49446628 - 49446708
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| ||| |||||||||||| ||| || ||||||| | ||||| | ||| |||||| || ||||||||||||||    
T  49446628 tgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaatccttaaagagtgccc 49446708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 50115118 - 50115058
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 161  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||||||| ||| |||||    
T  50115118 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttcttttg 50115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 36321625 - 36321739
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  36321625 aaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaatgtttaacttttctaaagaataattacttgttttggtat 36321724  T
Q  166 gcttaaagagtgccc 180  Q
    |||||||||||||||    
T  36321725 gcttaaagagtgccc 36321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 4521008 - 4521123
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  4521008 aaggactatatgtagaaagtatttataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttagtat 4521107  T
Q  166 gcttaaagagtgcccg 181  Q
    ||||||||||||||||    
T  4521108 gcttaaagagtgcccg 4521123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 4772121 - 4771995
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||| ||||||||||||||||||||   |||||| ||||||||| |||||||||| ||  ||||||| ||| |||||||||||  |||||||||||||||    
T  4772121 ataagtagcaagtatttataaaaatgtgtgtaattaatacattgaaaatcgaaatattctactttttaaaaaaataattgcttcatttggtatgcttaaa 4772022  T
Q  173 gagtgcccgccccggagacactcgttaacaa 203  Q
    ||||    ||||||||| |||||||||||||    
T  4772021 gagt----gccccggaggcactcgttaacaa 4771995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 46370924 - 46370828
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||| |||||||  |||||||||  ||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  46370924 aagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaagaataattgcttgttttgatatgcttaaagagtg 46370828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 36622023 - 36621928
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||| ||||||| |||||||||| |   ||||||||| |||| ||||||||||||||||||||||||||| |||||  ||| ||||||||||    
T  36622023 aagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtg 36621928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 4039626 - 4039716
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| | |||||||  || |||||| || ||||||||||||||    
T  4039626 ataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtgccc 4039716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 33744138 - 33744247
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||| ||| |||||||||| |||| | ||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||||| ||| ||||   |||||    
T  33744138 gactataagtagaaagtatttatgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaaaatgct 33744237  T
Q  169 taaagagtgc 178  Q
    ||||||||||    
T  33744238 taaagagtgc 33744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 48812027 - 48811928
Alignment:
Q  78 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||||||||| | |||||||||| ||||||| || ||||| ||| ||||||| ||||||||||| ||| ||||   | ||||||||||||    
T  48812027 tagcaagtatttataaaaatgcgtgtaatcaatgcattggagattgaaatattttactttttaaaagaataattacttattttaacaggcttaaagagtg 48811928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 40570774 - 40570681
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat-gcttaaagagtgccc 180  Q
    |||| ||||| ||||||||||||   | |||||||||||||||| ||||||||||||||||||||||  |||| | || |||||||||||||||    
T  40570774 ttatgaaaatgcatgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataattgctaatttttggatagcttaaagagtgccc 40570681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 7481409 - 7481481
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||||||||||||| |||| | |||||||||    
T  7481409 tgtaatcaatacattgaaaatcgaagtatttaactttttttaaagaataattgcttattttagcatgcttaaa 7481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 17112793 - 17112696
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag---aataattgcttgttttggtatgcttaaagagtgcc 179  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||| ||| |||||||| |||   ||||||| ||| |||||  ||||||||||||||||    
T  17112793 tatttatgaaaatatatgtaatcaatgcattggaaatcaaaatatttgacttttttgaagaataataattacttattttgccatgcttaaagagtgcc 17112696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 15549710 - 15549640
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttt 139  Q
    |||||||| ||||||||||||||||||||   |||||||||| ||||| |||||||||| ||| |||||||    
T  15549710 gactataagtagcaagtatttataaaaatgtgtgtaatcaatgcattgaaaatcgaaatattttacttttt 15549640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 39973961 - 39973862
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaaca 202  Q
    |||||||| ||||| |||| ||||  |||||| |||| ||||||||||| |||  ||| | |||||||||||||    ||||||||||||||||||||||    
T  39973961 taatcaatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaagagt----gccccggagacactcgttaaca 39973866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 2633100 - 2633027
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    ||||||||| ||||||||||||||  ||||||||||||||| ||| ||||||| |||| | ||| |||||||||    
T  2633100 taatcaatatattggaaatcgaaacatttaacttttttaaaaaattattgcttattttagaatgtttaaagagt 2633027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 26322638 - 26322710
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||| ||||| ||||||||||||   |||||||||||||||||| | |||||| |||||||||||||| ||||    
T  26322638 ttatgaaaatgcatgtaatcaatgtcttggaaatcgaaatgtttgattttttttaagaataattgcttatttt 26322710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 34445738 - 34445663
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 178  Q
    |||||||| |||||||||||||||| ||| ||||||||| | | ||||| ||| |||||| || ||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgc 34445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 45584610 - 45584531
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||||||  |||||  |||| ||||||||||||| | ||||||| ||| |||||| || ||||||||||||||    
T  45584610 tgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatccttaaagagtgccc 45584531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 9221239 - 9221309
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 152  Q
    |||||||||| ||||||  |||| | | | |||||||||||||||| |||||||||| |||||||||||||    
T  9221239 aagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatatttaacttttctaaagaataattg 9221309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 40203113 - 40203191
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    |||||||||| |||||||||| ||||| ||| |||||||||   ||||||| |||||||||  || |||||||||||||    
T  40203113 tgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 3047936 - 3047859
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||| |||||||||||||||  ||| || ||||||||||| |||| |||  ||| | |||||||||||||||||    
T  3047936 taatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtgccc 3047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 17554945 - 17554852
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 178  Q
    ||||||| |||| | || |||||||| ||||| |||| ||||  ||||||||||||||| |||||||| || |||||  ||| |||||||||||    
T  17554945 tatttatgaaaaaatatataatcaatgcattgtaaattgaaacatttaacttttttaaaaaataattgtttattttgaaatgtttaaagagtgc 17554852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 37705980 - 37705871
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||| |||||||||||||| |||| || |||||| ||| ||||| ||||| |||  ||| | |||| |||| ||||||| ||  |||| | |||||    
T  37705980 gactataagtagcaagtatttatgaaaaaacgtgtaattaatgcattgaaaatcaaaacatttgagttttctaaaaaataattactcattttcgaatgct 37705881  T
Q  169 taaagagtgc 178  Q
    ||||||||||    
T  37705880 taaagagtgc 37705871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 8836509 - 8836602
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||||| || ||| | ||| || |  |||||||||| ||| |||||||||||||||||||| || ||| |  ||||||||||||||    
T  8836509 aagtatttataaaaatgcaagtatttaatgcact--aaatcgaaatatttgacttttttaaagaataattgtttatttcgaaatgcttaaagagtg 8836602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 34861259 - 34861326
Alignment:
Q  113 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||| ||||||||| || |||||||| ||||||| |||  ||| | |||||||||||||||||    
T  34861259 attggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgccc 34861326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 37976933 - 37976823
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||| |  | |||||||||||||||  ||| |||| |||||| ||||| |||| ||| || ||||||||| ||||||  || |||| | ||    
T  37976933 aaggactataaatggttaatatttataaaaatacgcgtattcaaaacattgaaaatcaaaatatttgac-tttttaaagtataattttttattttagaat 37976835  T
Q  166 gcttaaagagtg 177  Q
    ||||||||||||    
T  37976834 gcttaaagagtg 37976823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 50670395 - 50670482
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattg 152  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||  || ||||||||| | |||| ||| | |||| ||||||||||||||    
T  50670395 aaggattataaatagtaagtatttatgaaaatgcatgtaatagatgcattggaaaacaaaatatttgattttttttaaagaataattg 50670482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 28672303 - 28672393
Alignment:
Q  82 aagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaa 171  Q
    ||||||||||||||| ||  |||||||||| ||||  ||||| |||| ||| ||||||||||| |||||||| || |||| | ||||||||    
T  28672303 aagtatttataaaaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgcttaa 28672393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 64863 - 64936
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||||||| || || || ||||||| |||||| ||||||||||||||||| || |||| | ||| |||||||||    
T  64863 taatcaatgcaatgaaattcgaaatatttaacgtttttaaagaataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 3755944 - 3756041
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    ||||||||||||||||  ||||||||||   |||| ||||  ||||| || ||| ||||||||||||||| ||| |||| | ||| ||||||| ||||    
T  3755944 aagtatttataaaaatgtatgtaatcaacgaattgcaaattaaaatgattgactcttttaaagaataatttcttattttagaatgtttaaagaatgcc 3756041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 35438069 - 35438102
Alignment:
Q  106 tcaatacattggaaatcgaaatgtttaacttttt 139  Q
    ||||| ||||||||||||||||||||||||||||    
T  35438069 tcaatgcattggaaatcgaaatgtttaacttttt 35438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 1048739 - 1048783
Alignment:
Q  136 tttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||    
T  1048739 tttttaaagaataattttttaatttggtatgcttaaagagtgccc 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 25302143 - 25302067
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||||  |||| |||||||||| ||| ||||||||| | ||| |||  ||||||||| || |||||||||||    
T  25302143 tgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaaagagtg 25302067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 7513295 - 7513430
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||| |||    
T  7513295 aaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttaatttttctaaagaataattgcttgttttgatat 7513394  T
Q  166 gcttaaagagtgcccgccccggagacactcgttaacaaga 205  Q
    |||||||||||||||    |||  ||||||||||||||||    
T  7513395 gcttaaagagtgccc----cgggaacactcgttaacaaga 7513430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 205
Target Start/End: Original strand, 36348494 - 36348624
Alignment:
Q  72 tataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 170  Q
    ||||| || |||||||||||| ||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| || ||||||    
T  36348494 tataagtaacaagtatttatataaagtacatgtaatcaatgcattgaaaatcaaaatgtttaacttttttaaagaataattgcttattttagtgtgctta 36348593  T
Q  171 aagagtgcccgccccggagacactcgttaacaaga 205  Q
    || |||    |||||||||||| ||||||||||||    
T  36348594 aaaagt----gccccggagacattcgttaacaaga 36348624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 11078025 - 11077913
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||| |||||| ||||| |||||||| || |||| |||  || ||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  11078025 aaggactataagtagcaactatttttaaaaatatatataattaatgtataggaaatcgaaaagtttgaattttttaaagaataattgcttgttttggtat 11077926  T
Q  166 gcttaaagagtgc 178  Q
    || ||||||||||    
T  11077925 gcataaagagtgc 11077913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 39093185 - 39093055
Alignment:
Q  72 tataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgt-tttggtatgctta 170  Q
    ||||| |||||  ||||||||||||| | |||||||||| |||||||| ||||||| ||  ||||||||||||||||||||||| | |||||||||||||    
T  39093185 tataagtagcacatatttataaaaatgcgtgtaatcaatgcattggaactcgaaatattatacttttttaaagaataattgcttttgtttggtatgctta 39093086  T
Q  171 aagagtgcccgccccggagacactcgttaacaaga 205  Q
    ||||||     |||||| |||||||||||||||||    
T  39093085 aagagt----accccggggacactcgttaacaaga 39093055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 22209505 - 22209401
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||||||| |||||||||| |||||| |||||||||||   ||||||||| |||| |||||||||||||| |||||||||||| ||||   |||||||||    
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaa 22209406  T
Q  173 gagtg 177  Q
    |||||    
T  22209405 gagtg 22209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 9460517 - 9460450
Alignment:
Q  113 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9460517 attgaaaatcgaaatgtttgacttttctaaagaataattgcttgttttggtatgcttaacgagtgccc 9460450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 12782837 - 12782772
Alignment:
Q  112 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||||| || |||||||||||||||||||||| | |||| ||||||||||||||||    
T  12782837 cattggaaatcgaaatattcaacttttttaaagaataattgcatattttagtatgcttaaagagtg 12782772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 8642679 - 8642722
Alignment:
Q  10 aataatattgatagaaacataagactgcaaaaggattcatctaa 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8642679 aataatattgatagaaacataagactgcaaaaggattcatctaa 8642722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 11993873 - 11993829
Alignment:
Q  133 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  11993873 acttttttaaagaataattgcttgtttttgtatgcttaaagagtg 11993829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 11995216 - 11995160
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatc 122  Q
    |||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  11995216 aaggcctataaatagcaagtatttataaaaatacgagtaatcaatgcattggaaatc 11995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 2445124 - 2445218
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    ||||| ||||| ||| ||||||||||||||||||||||||  | | | ||| |||||||||| ||||||||||  ||| ||||||||||| ||||    
T  2445124 aaggattataagtagtaagtatttataaaaatacatgtaacgattgccttgaaaatcgaaatatttaacttttaaaaaaaataattgcttatttt 2445218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 27056016 - 27055903
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||| ||| || ||||||| |||| |  ||||||||||||||||||||||||||  ||||||||| ||    ||||||| ||| ||||   ||    
T  27056016 aaggactataagtagtaattatttatgaaaaaatgtgtaatcaatacattggaaatcgaaacatttaactttcttttgaaataatttcttattttaaaat 27055917  T
Q  166 gcttaaagagtgcc 179  Q
    ||||||||||||||    
T  27055916 gcttaaagagtgcc 27055903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 40949448 - 40949379
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||| ||  |||||| | ||||||||||    
T  40949448 aagtatttataaaaatgcatgtaattaatatattggaaatcgaaatattagacttttatgaagaataatt 40949379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 36924119 - 36924031
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||| ||||| |||||||| |||   |||||||||||||| ||| ||||||||||||||||||| |||||||| |   |||||||||||    
T  36924119 ttatgaaaatgcatgtaattaatgttttggaaatcgaaatatttgacttttttaaagaataatttcttgtttttgatagcttaaagagt 36924031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 8108247 - 8108362
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgttttggta 164  Q
    ||||| ||||| ||| |||||||||| |||||   ||||||||||| ||   ||||| |||| |||||||||||||| |||||| ||| || |||| | |    
T  8108247 aaggattataagtagaaagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttttaatgaataacttgtttattttagaa 8108346  T
Q  165 tgcttaaagagtgccc 180  Q
    ||||||||||||||||    
T  8108347 tgcttaaagagtgccc 8108362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 20279602 - 20279669
Alignment:
Q  113 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  20279602 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 20279669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 21066229 - 21066296
Alignment:
Q  113 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  21066229 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 21066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 45368775 - 45368865
Alignment:
Q  118 aaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg--cccgccccggagacactcgttaacaagat 206  Q
    |||| ||||| ||||||||||||| | ||||||| ||| |||||| || |||||||||||  |||||||||| | |||||||||| |||||    
T  45368775 aaattgaaatatttaacttttttataaaataatttctttttttggaatccttaaagagtgcccccgccccgggggcactcgttaaaaagat 45368865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 12002365 - 12002259
Alignment:
Q  74 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 173  Q
    ||||||| || | |||||||||||   |||||||| | |||||||||| ||||  ||| || |||||||||||||||| |||  ||| |||| |||||||    
T  12002365 taaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatacttaaag 12002266  T
Q  174 agtgccc 180  Q
    |||||||    
T  12002265 agtgccc 12002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 5217782 - 5217833
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttta 141  Q
    |||||||||  |||||||||||||| |||||||||||| ||| |||||||||    
T  5217782 ataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgactttttta 5217833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 17521038 - 17521077
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaactttttt 140  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  17521038 tgtaatcaatacattggaaaacgaaatatttaactttttt 17521077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 31265061 - 31264990
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| | | |  ||| | ||||||||||||||||    
T  31265061 aatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgcc 31264990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 39333550 - 39333593
Alignment:
Q  117 gaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  39333550 gaaatcgaaatgtttgacttttttgaagaataattgcttatttt 39333593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 37167125 - 37167016
Alignment:
Q  67 aggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatg 166  Q
    ||||| |||||| | || |||| || ||||| | |||| ||||| |||||||||||||| | ||||| |||||| ||||||||||| || |||||  |||    
T  37167125 aggaccataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa-ttttttgaagaataattgtttattttgaaatg 37167027  T
Q  167 cttaaagagtg 177  Q
     ||||||||||    
T  37167026 tttaaagagtg 37167016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 24103052 - 24103162
Alignment:
Q  66 aaggactataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggta 164  Q
    ||||||||||| ||| |||||||| | ||||||||  ||||||| | ||| |||||||||||  ||| || |||| ||| ||||||| ||| |||| | |    
T  24103052 aaggactataagtagtaagtatttgtgaaaaatac--gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttattttagaa 24103149  T
Q  165 tgcttaaagagtg 177  Q
    |||||||||||||    
T  24103150 tgcttaaagagtg 24103162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 37564374 - 37564443
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||| |||  ||| | ||| ||||||||||    
T  37564374 aatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtg 37564443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42760181 - 42760258
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||||| |||||||||| ||||  ||| | |||||||  |||||||| ||  |||||| ||||||||||||||    
T  42760181 atgtaatcaatgcattggaaattgaaacatttgatttttttatggaataatttctccttttggaatgcttaaagagtg 42760258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 5293760 - 5293852
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaaga 174  Q
    |||||||||| ||||| |||||||| | | ||||  ||||| |||| |||||||||| ||||||| |||| ||| ||||   |||||||||||    
T  5293760 aagtatttatgaaaatgcatgtaattattgcattaaaaatcaaaatatttaacttttataaagaacaattacttattttaaaatgcttaaaga 5293852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 7528262 - 7528338
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||||  ||||||||||||||| ||| |||||  |||||||||||| ||| ||||   ||||||||| ||||    
T  7528262 tgtaatcaatgtattggaaatcgaaatatttgactttcgtaaagaataattacttattttaaaatgcttaaaaagtg 7528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 30509422 - 30509287
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| |||||||||    
T  30509422 aaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtat 30509323  T
Q  166 gcttaaagagtgcccgccccggagacactcgttaacaaga 205  Q
    |||||||||||    |  ||||||||||||||||||||||    
T  30509322 gcttaaagagt----gttccggagacactcgttaacaaga 30509287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 13070645 - 13070783
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||||||| || ||||||| |||| | |||||||||||  ||||||||||  ||  ||||||||||| ||| ||| ||||||| |||| | ||       
T  13070645 gactataaatagtaactatttatgaaaaaatatgtaatcaatgtattggaaatcacaacatttaactttttaaaaaaattattgcttattttagaatatc 13070744  T
Q  169 taaagagtg-cccgccccggagacactcgttaacaagat 206  Q
    ||||||||| |||||||| ||  ||||||||||||||||    
T  13070745 taaagagtgccccgccccagatgcactcgttaacaagat 13070783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 30250663 - 30250611
Alignment:
Q  124 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||||||||||    
T  30250663 aaatgtttgacttttttgaagaataattgtttgtcttggtatgcttaaagagt 30250611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 31702748 - 31702854
Alignment:
Q  74 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 173  Q
    ||||||| || | ||||||||||||  |||||||||| |||| |||||  ||||  |||||||||||| | ||||||| ||| |||||  || |||||||    
T  31702748 taaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaag 31702847  T
Q  174 agtgccc 180  Q
    |||||||    
T  31702848 agtgccc 31702854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 13070508 - 13070646
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||||||| || ||||||| |||| |  ||||||||||  ||||||||||  ||  ||||||||||| ||| ||| ||||||| |||| | ||       
T  13070508 gactataaatagtaactatttatgaaaaaatgtgtaatcaatgtattggaaatcacaacatttaactttttaaaaaaattattgcttattttagaatatc 13070607  T
Q  169 taaagagtg--cccgccccggagacactcgttaacaaga 205  Q
    |||||||||  |||||||| ||  |||||||||||||||    
T  13070608 taaagagtgcccccgccccagatgcactcgttaacaaga 13070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 12383042 - 12383132
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||  | |||||||| ||| ||||||| |||| ||||||||||||| | ||||||| ||  |||||  || ||||||||||||||    
T  12383042 ataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctccttttgaaattcttaaagagtgccc 12383132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 13811145 - 13811033
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||| |    
T  13811145 aagggctataaatagaaagtatttataaaaatacgtgtgatcaatgcattggaaattaaaatattttacttttttaaagaataattgcttgttttggt-t 13811047  T
Q  166 gcttaaagagtgcc 179  Q
    ||||||||||||||    
T  13811046 gcttaaagagtgcc 13811033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 18223208 - 18223087
Alignment:
Q  78 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||||||||||| | | |||||||| |||||||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||| |||     
T  18223208 tagcaagtatttataaaaatgcgtataatcaatgcattggaaattgaaatattctatttttttaaagaataattgcttgttttggtatgcttaaaaagt- 18223110  T
Q  178 cccgccccggagacactcgttaacaa 203  Q
       | |||| ||||||||||||||||    
T  18223109 ---gtcccgaagacactcgttaacaa 18223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 2825961 - 2826066
Alignment:
Q  71 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 170  Q
    |||||| ||| ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||| |||| |||||||||    
T  2825961 ctataagtagtaagtatttataaaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgctta 2826060  T
Q  171 aagagt 176  Q
    ||||||    
T  2826061 aagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 27133179 - 27133072
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||| ||| |||| ||| ||||||| ||| |||||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||| |    
T  27133179 gactataagtagtaagtgtttttaaaaatgcatataatcaatgcattggaaatcgaattgtatgacttttttaaagaataattgcttattttagtatgtt 27133080  T
Q  169 taaagagt 176  Q
    ||||||||    
T  27133079 taaagagt 27133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 16717708 - 16717604
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||| ||| |||||||||| ||||| ||| |||||||| | ||||||||| |||| ||||| ||||||||||||||||| ||| |||| | |||||||||    
T  16717708 ataagtagtaagtatttatgaaaatgcatataatcaatgctttggaaatcaaaatatttaatttttttaaagaataattacttattttagaatgcttaaa 16717609  T
Q  173 gagtg 177  Q
    |||||    
T  16717608 gagtg 16717604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 26408341 - 26408456
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag--aataattgcttgttttggt 163  Q
    ||||| ||| || ||||||||||||||||||||  ||||||||||  ||| ||||| ||||| ||| ||||||||      |||||||||||||||||||    
T  26408341 aaggaatattaaaagcaagtatttataaaaatatgtgtaatcaatgtattagaaattgaaatattttactttttttttttaaataattgcttgttttggt 26408440  T
Q  164 atgcttaaagagtgcc 179  Q
    ||||||||||||||||    
T  26408441 atgcttaaagagtgcc 26408456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 3882687 - 3882608
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| ||||| ||| |||||| ||| || |||||||||||||||||||| |||| | |||||||||||||||||    
T  3882687 tgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccc 3882608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 2889014 - 2888929
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    ||||||||||| ||| | |||||||| ||||    |||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  2889014 aaggactataagtagtatgtatttatgaaaaagtgtgtagtcaatacattggaaatcgaaatatttaacttttttaaaaaataatt 2888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 42924424 - 42924529
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||||||| || ||||||| ||||| |||||||||||||| ||| |||| ||||| ||| | |||||| || ||||||| ||| |||| | |||||||||    
T  42924424 ataaatagtaaatatttatgaaaatgcatgtaatcaatacgttgaaaattgaaatatttgattttttttaaaaataattacttcttttagaatgcttaaa 42924523  T
Q  173 gagtgc 178  Q
    ||||||    
T  42924524 gagtgc 42924529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 8964482 - 8964386
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 178  Q
    |||||||||| |||||   |||||||||| |||||||||| ||||| ||| ||||||||||||||||||| |||  ||| | ||||||||| |||||    
T  8964482 aagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtgc 8964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 6761760 - 6761839
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||| ||||| |||  || |||||| ||||||||||||||||    
T  6761760 atgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcc 6761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 45076186 - 45076241
Alignment:
Q  124 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    |||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  45076186 aaatatttaacttttttaaagaataattgcttattttagtatgtttaaagagtgcc 45076241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 10824721 - 10824647
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 162  Q
    |||| |||||||||||||||||||  ||||||||  |||||||| ||||||| ||||||||| ||||| ||||||    
T  10824721 ttatgaaaatacatgtaatcaatatcttggaaattaaaatgtttgactttttaaaagaataactgcttattttgg 10824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 35312209 - 35312103
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    |||||| |||||||| || |||||||||||||  ||||||| ||||||||| ||||  |||| ||||| |||||||||||| | ||| || |||| | ||    
T  35312209 aaggaccataaatagtaaatatttataaaaatgtatgtaatgaatacattgtaaattaaaatatttaatttttttaaagaaaatttgtttattttagaat 35312110  T
Q  166 gcttaaa 172  Q
    |||||||    
T  35312109 gcttaaa 35312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 6797296 - 6797192
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    ||||||| ||| ||||||| |||||||||||||| | | ||||| ||| | |||| ||| |||||||||||  ||||||| || |||| ||||| |||||    
T  6797296 ataaataacaaatatttatgaaaatacatgtaattattgcattgaaaaacaaaatatttgacttttttaaatgataattgattattttagtatgtttaaa 6797197  T
Q  173 gagtg 177  Q
    |||||    
T  6797196 gagtg 6797192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 33275940 - 33276004
Alignment:
Q  113 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||| |||| ||||| ||||||||||||||| ||||||| |||||||| | ||||||||||||||    
T  33275940 attgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtg 33276004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 35477693 - 35477778
Alignment:
Q  71 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgctt 155  Q
    |||||| ||| |||||||| ||||||| ||||| |||| |   |||||||||||||| ||| || |||||||||||||||||||||    
T  35477693 ctataagtagtaagtatttttaaaaatgcatgtcatcattgtcttggaaatcgaaatatttgactttttttaaagaataattgctt 35477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 10204237 - 10204149
Alignment:
Q  92 aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||| |||||||||||| ||||| |||||||||  ||| | |||||| ||||||||||  || |||||  ||| |||||||||||||    
T  10204237 aaaaatgcatgtaatcaatgcattgaaaatcgaaacatttgaattttttgaagaataattatttattttgtaatggttaaagagtgccc 10204149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 12075564 - 12075636
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||||||| ||||| ||| |||||| ||   |||| || ||| ||||||||||||||||||||||||    
T  12075564 aatacattggaaattgaaatatttgacttttgtatgaaatagtttcttcttttggtatgcttaaagagtgccc 12075636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 14102299 - 14102436
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttggta 164  Q
    ||||||||||| ||| || ||||||| ||||    ||||||||||  ||||||||||||||| ||||||||||||    || ||||| ||| |||||| |    
T  14102299 aaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttggca 14102398  T
Q  165 tgcttaaagagtgcccgccccggagacactcgttaacaagat 206  Q
    || ||||||||||| |    ||||| ||||||||||||||||    
T  14102399 tgtttaaagagtgctc----cggaggcactcgttaacaagat 14102436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 19495293 - 19495237
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt 138  Q
    ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||    
T  19495293 aagtatttataaaaatgggtgtaatcaatgcattggaaatcgaaatatttgactttt 19495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 44941108 - 44941192
Alignment:
Q  93 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |  ||| || ||| |||| | || |||||||||||    
T  44941108 aaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatccttaaagagtg 44941192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 9153483 - 9153581
Alignment:
Q  74 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 173  Q
    ||||||| |||| |||||||||||   |||| ||||| |||||||||| ||| |||||  |||||||||||||||||| |||  ||||| || |||||||    
T  9153483 taaatagtaagt-tttataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaag 9153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 31513823 - 31513724
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 200  Q
    |||||||||| |||||||||||||||  ||||| |||||  || ||||||| ||| |||| | | |||||||||||    |||||||||||||||| |||    
T  31513823 tgtaatcaatgcattggaaatcgaaacatttaaatttttataaaaataatt-cttattttagaaagcttaaagagt----gccccggagacactcgctaa 31513729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 37617396 - 37617499
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||| |||||||| ||||| |||||  ||| |||||||  |||||||||  |||| ||||| |||||||||||||||||  || ||||   |||||||||    
T  37617396 ataagtagcaagtgtttatgaaaatgtatgcaatcaatgtattggaaataaaaatatttaatttttttaaagaataattatttattttaaaatgcttaaa 37617495  T
Q  173 gagt 176  Q
    ||||    
T  37617496 gagt 37617499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 20128415 - 20128353
Alignment:
Q  87 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa 149  Q
    ||||||||||||| |||||||||| |||||||| | | ||  ||| |||||||||||||||||    
T  20128415 tttataaaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataa 20128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 32859849 - 32859808
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataa 149  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  32859849 aatacattggaaattgaactgtttgacttttttaaagaataa 32859808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 13538468 - 13538388
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||| ||||| |||||||||| ||| | ||| | |||||||||||||||||   |  ||| |||||||||||||||||||    
T  13538468 atgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtgccc 13538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 27948048 - 27948092
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaat 147  Q
    |||||||| |||||||||||||||  ||| |||||||||||||||    
T  27948048 taatcaatgcattggaaatcgaaacatttgacttttttaaagaat 27948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 45303624 - 45303580
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaat 110  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||    
T  45303624 aaggaccataaatagtaagtatttatgaaaatgcatgtaatcaat 45303580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 37708524 - 37708430
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    |||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||    
T  37708524 tatttataaaaatacatgtaatcagtgcattgaaaattgaaatgtttaacttttttaaagactaattgcttattttaatatgcttaaagagtgcc 37708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 46711914 - 46712008
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||| ||||    
T  46711914 aaggaccataaataacaagtatttataaaaatgcatgtaatcaatgcattggaaatcaaaatgtttgacttttttaaagaataattacttatttt 46712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 52309274 - 52309184
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 156  Q
    |||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  52309274 aagggctataagtagcaagtatttataaaaatacgtgtaatcaatgcattggaaatcgaaatattttacctttttaaagaataattgcttg 52309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 39400293 - 39400388
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||| ||||||||||||||  || |||| |||| |||||||||||    
T  39400293 aagtatttataaaaatacatgtaattaatgcattgaaaattaaaatgtttaacttgtttaaagaataattaattattttagtatacttaaagagtg 39400388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 50217002 - 50217083
Alignment:
Q  96 atacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 178  Q
    ||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  50217002 atacatgtaatcaat-cattgaaaatcgaaatgattgacttctttaaagaataattgcttgttttagtatgtttaaagagtgc 50217083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 38457224 - 38457324
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||||||| |||||||||  |||||||||||||||||| ||||| ||||| |||| ||||| ||||||||||||||||||||| || | | |||||||||    
T  38457224 ataaatagtaagtatttacgaaaatacatgtaatcaatgcattgaaaatcaaaatatttaa-ttttttaaagaataattgcttattatagaatgcttaaa 38457322  T
Q  173 ga 174  Q
    ||    
T  38457323 ga 38457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 40546427 - 40546348
Alignment:
Q  73 ataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||| ||| |||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||||| |||||||    
T  40546427 ataagtagtaagtatttatgaaaaatgcatgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 48322206 - 48322316
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    |||||| |||| ||| | |||||||| |||| |||||||||||||  ||||||||||||||  ||| ||||||| ||| ||||||| ||| |||| | ||    
T  48322206 aaggaccataagtagtaggtatttatgaaaaaacatgtaatcaatgtattggaaatcgaaacatttgactttttaaaaaaataattacttattttagaat 48322305  T
Q  166 gcttaaagagt 176  Q
    |||||||||||    
T  48322306 gcttaaagagt 48322316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 30082960 - 30082849
Alignment:
Q  71 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt--aaagaataattgcttgttttggtatgct 168  Q
    |||||||||| |||||||| ||||||| |||||||||| | | || | ||| ||||| ||| ||||||||  ||||||||| ||||| |||| | |||||    
T  30082960 ctataaatagtaagtatttttaaaaatccatgtaatcatttctttaggaattgaaatatttgacttttttttaaagaataactgcttattttagaatgct 30082861  T
Q  169 taaagagtgccc 180  Q
    ||||||||||||    
T  30082860 taaagagtgccc 30082849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 52309047 - 52309008
Alignment:
Q  141 aaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52309047 aaagaataattgcttgttttggtatgcttaaagagtgccc 52309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 24658464 - 24658532
Alignment:
Q  94 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 162  Q
    |||| |||||||| ||||  || ||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24658464 aaatgcatgtaattaatatcttagaaatcgaaatatttaacttttttaaagaataatttcttattttgg 24658532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 25461561 - 25461462
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta-acttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||  |||||| |||||||||| | | |||||||| ||||| |||  |||||||||||||||||| |||| |||||  ||| |||||||||||||    
T  25461561 aagtattttaaaaaatgcatgtaatcattgccttggaaattgaaatattttgacttttttaaagaataatggcttattttgcaatgtttaaagagtgccc 25461462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 23642786 - 23642744
Alignment:
Q  135 ttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  23642786 tttttttaagaataattgcttattttggtatgcttaaagagtg 23642744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 40392479 - 40392413
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    ||||||| |||||| ||||||||||| |||| |||||  |||| ||||||||||||||||| |||||    
T  40392479 tatttatgaaaatatatgtaatcaatgcattagaaataaaaatatttaacttttttaaagagtaatt 40392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 1511407 - 1511326
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||| |||||||||| ||||| ||| || ||||| | | ||||||| ||| |||||| |||||||||||||||||    
T  1511407 atgtaatcaatgcattggaaattgaaatctttgacatttttgatggaataatttcttcttttggcatgcttaaagagtgccc 1511326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 41571601 - 41571682
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||| |||| ||||| ||||| |||  ||||||||| ||| ||||| ||| |||||| |||||||||||||||||    
T  41571601 atgtaatcaatgcattcgaaattgaaatttttggcttttttaatgaaataatttcttcttttggaatgcttaaagagtgccc 41571682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 8703339 - 8703427
Alignment:
Q  91 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  8703339 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 8703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 9055226 - 9055314
Alignment:
Q  91 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 179  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  9055226 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 9055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 11404791 - 11404727
Alignment:
Q  87 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||||||||||||||||||| ||||||||  ||||  |||| ||||||||||||| | |||||||    
T  11404791 tttataaaaatacatgtaattaatacattaaaaattaaaatatttaacttttttataaaataatt 11404727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 18399194 - 18399274
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaactttttta-aagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| || ||| ||| ||| |||||| || ||||||||||||||    
T  18399194 tgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttcttcttttggaatccttaaagagtgccc 18399274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 50368424 - 50368500
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    ||||||||||||||||| ||  ||||||| || | |||||| |||| ||| ||||||||||||||||||| ||| ||||    
T  50368424 aagtatttataaaaatatat--aatcaatgcaatagaaatcaaaatatttgacttttttaaagaataattacttatttt 50368500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 31901811 - 31901904
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||||| |||||||  |||||||||| ||||| ||||||||||||| ||| |||||| |||| | | || |||||||| ||||||| ||| ||||    
T  31901811 aaggaccataaataataagtatttatgaaaatgcatgtaatcaatatattagaaatcaaaatatatgac-tttttaaacaataattacttatttt 31901904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 34759007 - 34758900
Alignment:
Q  94 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacac 193  Q
    ||||| ||||||||||| |||  | | ||||||| ||| ||||||||| | ||||||| ||| |||| | || ||||||||||    ||||||||| |||    
T  34759007 aaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttctttttgaatccttaaagagt----gccccggaggcac 34758912  T
Q  194 tcgttaacaaga 205  Q
    ||||||||||||    
T  34758911 tcgttaacaaga 34758900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 47115313 - 47115403
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgctt 155  Q
    |||||| |||||||  |||||||||| |||| ||||||||||||| ||||| ||||| |||  ||| | ||||| |||| |||||||||||    
T  47115313 aaggaccataaataataagtatttatcaaaaaacatgtaatcaatgcattgaaaatcaaaacatttgattttttaaaagaaataattgctt 47115403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 43804033 - 43803992
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataa 149  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  43804033 aatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 54290819 - 54290860
Alignment:
Q  108 aatacattggaaatcgaaatgtttaacttttttaaagaataa 149  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  54290819 aatacattggaaattgaactgtttgacttttttaaagaataa 54290860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 5504809 - 5504884
Alignment:
Q  82 aagtatttataaaaatacatgtaatca--atacattggaaatcgaaatgtttaacttttttaaagaataattgctt 155  Q
    |||||||||| ||||| ||||||||||  |||| ||  |||| ||||| ||| ||||||||||||||||| |||||    
T  5504809 aagtatttatgaaaatgcatgtaatcataataccttaaaaattgaaatatttgacttttttaaagaataactgctt 5504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 55110112 - 55110048
Alignment:
Q  87 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    ||||| |||||| ||||||||||| ||||| |||||||||| ||| | ||||||| | |||||||    
T  55110112 tttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataatt 55110048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 42890266 - 42890345
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaata 148  Q
    |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||    
T  42890266 gactataagtagcaagtatttttaaaaatacatgtaatcaatgtattggaaatcgaaatgtttgacttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 42911166 - 42911060
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||  ||| ||||||||||||||||||||||||||  | ||||| |||| ||||||||  ||||||||||||||||||||||| |||| ||||    
T  42911166 aaggactatatgtagaaagtatttataaaaatacatgtaatcggtgcattgaaaattgaaatgttcgacttttttaaagaataattgcttattttagtat 42911067  T
Q  166 gcttaaa 172  Q
     ||||||    
T  42911066 acttaaa 42911060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 1360642 - 1360531
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||| ||| | |||||||||||||    |||||||||| |||||||||||||||  ||||||||||||||| ||||||| ||  |||||| ||    
T  1360642 aaggactataagtagtatgtatttataaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaattttggaat 1360543  T
Q  166 gcttaaagagtg 177  Q
    ||||||||||||    
T  1360542 gcttaaagagtg 1360531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 9533522 - 9533625
Alignment:
Q  69 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 168  Q
    |||||||||||  |||||||||||||||| | |||||||||| ||||| ||||| |||| ||| | ||||| ||| ||||||||||||||||| ||||||    
T  9533522 gactataaataataagtatttataaaaatgcgtgtaatcaatgcattgaaaatcaaaatattttattttttaaaaaaataattgcttgttttgatatgct 9533621  T
Q  169 taaa 172  Q
    ||||    
T  9533622 taaa 9533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 10031921 - 10032032
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||||| | |||||||| ||||    |||||||||| |||||||||||||||  ||||||||||| ||| ||||||| ||  |||||| ||    
T  10031921 aaggactataaatagtatgtatttatgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttggaat 10032020  T
Q  166 gcttaaagagtg 177  Q
    ||||||||||||    
T  10032021 gcttaaagagtg 10032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 33887869 - 33887963
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||| |||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||||||  || |||||| ||||||||||||||    
T  33887869 aagtatttatgaaaata-atgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtg 33887963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 15995983 - 15995905
Alignment:
Q  78 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 155  Q
    ||||||||| |||| ||||||  |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||    
T  15995983 tagcaagtaattatgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaactttttttaaagaatagttgctt 15995905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 40065799 - 40065865
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaata 148  Q
    ||||||||||||||||||||||| || ||  |||| ||||| |||| ||||||||||||||||||||    
T  40065799 aagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttttaaagaata 40065865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 3256643 - 3256736
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaaaga 174  Q
    |||||||||| ||||||  |||| ||| | |||||||||||||||  ||| |||||| ||||||||||||||||| |||||  |||||||||||    
T  3256643 aagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttgactttttttaaagaataattgcttattttgaaatgcttaaaga 3256736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 47507681 - 47507581
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 200  Q
    |||||||||||||| |||||| ||||| ||| | ||||||| | ||| ||| ||| |||| | || ||||||||||    ||||||||||||||||||||    
T  47507681 tgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaagagt----gccccggagacactcgttaa 47507586  T
Q  201 caaga 205  Q
    |||||    
T  47507585 caaga 47507581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 44719424 - 44719484
Alignment:
Q  94 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgct 154  Q
    |||| ||||||||||||   || ||||||||||||||| ||||||||||| ||||||||||    
T  44719424 aaatgcatgtaatcaatgttttagaaatcgaaatgtttgacttttttaaaaaataattgct 44719484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 8920737 - 8920815
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 178  Q
    ||||||||||| |||||||||| ||||  ||| |||||| ||  |||||||| ||  |||||| |||||||||||||||    
T  8920737 atgtaatcaatgcattggaaattgaaacatttgacttttctatggaataatttctccttttggaatgcttaaagagtgc 8920815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 676395 - 676483
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||||  |||||||||| ||||  |||||||||| |||||| |||||||  ||||||| ||| |||| | ||| ||||||||||    
T  676395 ttataaaaatatgtgtaatcaatgcatttaaaatcgaaatatttaac-tttttaataaataattacttattttagaatgtttaaagagtg 676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 28733764 - 28733869
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaa 171  Q
    |||||||| || ||||| ||||||| |||||||||| |    ||||| || |||| |||||||||| |||||||||||||| || ||||   ||||||||    
T  28733764 ataaatagaaaatatttttaaaaatgcatgtaatcattgtcatggaattcaaaatatttaactttttttaaagaataattgtttattttaaaatgcttaa 28733863  T
Q  172 agagtg 177  Q
    ||||||    
T  28733864 agagtg 28733869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 5248671 - 5248747
Alignment:
Q  104 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||| |||||||||| | | | |||||| |||||||||||||||| |||  || || || ||||||||||||||    
T  5248671 aatcaatgcattggaaattggagtttttaacatttttaaagaataatttctttattaggaatccttaaagagtgccc 5248747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 14574817 - 14574749
Alignment:
Q  88 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 155  Q
    |||| ||||||  |||||||||| ||||| |||||||| | |||||||| |||||||||||| ||||||    
T  14574817 ttatgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaactttttttaaagaatagttgctt 14574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 17157804 - 17157884
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| |||||||||| ||||  ||| |||||||| | | ||||||| ||  |||||| |||||||||||||||||    
T  17157804 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaataatttctccttttggaatgcttaaagagtgccc 17157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 28770537 - 28770448
Alignment:
Q  112 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 205  Q
    |||||||||| | |||  || ||||||  ||||||||||| ||  |||||| |||||||||||||    ||||||||| |||||||||||||||    
T  28770537 cattggaaattgtaatagttgacttttcaaaagaataattactaattttgggatgcttaaagagt----gccccggaggcactcgttaacaaga 28770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 32017417 - 32017532
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggta 164  Q
    |||| ||||||| |||||||||||||||||| |    ||||||||| ||||| |||| ||||| ||| ||||||||||||||||||||||||||||| ||    
T  32017417 aagggctataaagagcaagtatttataaaaaatgtgagtaatcaatgcattgaaaattgaaatattttacttttttaaagaataattgcttgttttgata 32017516  T
Q  165 tgcttaaagagtgccc 180  Q
    || |||||||||||||    
T  32017517 tgtttaaagagtgccc 32017532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 34032097 - 34032204
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||| ||| |||||||| ||||||| |||||||||| | | || ||||| ||||| ||||||||||||||||||||||| ||| |||| | |||||||||    
T  34032097 ataagtagtaagtatttttaaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaa 34032196  T
Q  173 gagtgccc 180  Q
    ||||||||    
T  34032197 gagtgccc 34032204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 27833290 - 27833376
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 152  Q
    |||||| | |||||| |||||||||| ||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||||||||    
T  27833290 aaggaccacaaatagtaagtatttatgaaaatgcatgtaatcaatgcattgtaaatcgaaatatttgacttttgtaaagaataattg 27833376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 17098205 - 17098321
Alignment:
Q  85 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccc 184  Q
    ||||| |||||||  ||||||||| |   |||||||||||||| ||| ||||||||||| ||||||||||| |||||  ||| |||||||||    ||||    
T  17098205 tatttttaaaaatgaatgtaatcattgtcttggaaatcgaaatatttgacttttttaaataataattgcttattttgtgatgtttaaagagt----gccc 17098300  T
Q  185 cggagacactcgttaacaaga 205  Q
    ||| |||||||||||||||||    
T  17098301 cggcgacactcgttaacaaga 17098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 26663706 - 26663635
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26663706 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 26935301 - 26935230
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26935301 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 27016743 - 27016663
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||| || |||||||||| ||||| ||| |||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  27016743 atgtaatcgatgcattggaaattgaaatttttgacttttttatggaataatttcttcttttggaatgcttaaagagtgccc 27016663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 10145349 - 10145451
Alignment:
Q  75 aaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaaga 174  Q
    |||||| ||||||||||||||||   |||||| ||| ||||  ||||| |||| ||| |||||||||||||||| ||  || ||||||| ||||||||||    
T  10145349 aaatagtaagtatttataaaaatgtgtgtaattaatgcattcaaaatcaaaatattttacttttttaaagaatatttatttattttggtgtgcttaaaga 10145448  T
Q  175 gtg 177  Q
    |||    
T  10145449 gtg 10145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 8761999 - 8761922
Alignment:
Q  100 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||| |||||||||||| |||| ||||| ||||||||||||| ||||||||| ||| |||| | || |||||||||||    
T  8761999 atgtcatcaatacattgaaaattgaaatatttaacttttttatagaataatttctttttttagaatccttaaagagtg 8761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 36160409 - 36160314
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||||| ||||  | |||||| |||| |||| ||||| |||  ||| ||||||||||| ||||||||||| |||| | ||||||||||||||    
T  36160409 aagtatttatgaaaaatcgtgtaattaatatattgaaaatcaaaacatttgacttttttaaaaaataattgcttattttagaatgcttaaagagtg 36160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 42338033 - 42338072
Alignment:
Q  92 aaaaatacatgtaatcaatacattggaaatcgaaatgttt 131  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  42338033 aaaaatacatgtaatcaatgcattggaaatcgaaatgttt 42338072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 779191 - 779078
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||||||||||||| | |||||||  ||||    |||||||||| |||||||||||||||  ||||||| ||||||| ||||||| ||  |||| | ||    
T  779191 aaggactataaatagtatgtatttacgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaact-ttttaaaaaataattactaatttttgaat 779093  T
Q  166 gcttaaagagtgccc 180  Q
    | |||||||||||||    
T  779092 gtttaaagagtgccc 779078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 28793417 - 28793306
Alignment:
Q  90 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggag 189  Q
    ||||||||| ||||||| ||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||    ||| |||||     
T  28793417 ataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaaagag----cgcaccggaa 28793322  T
Q  190 acactcgttaacaaga 205  Q
     |||||||||||||||    
T  28793321 gcactcgttaacaaga 28793306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 39382490 - 39382556
Alignment:
Q  111 acattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||| ||||  |||| ||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  39382490 acattgaaaataaaaatatttaactttttaaaagaataattgtttgatttggaatgcttaaagagtg 39382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 141911 - 141867
Alignment:
Q  133 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||||| |||||||||||| || |||||||||||||||||||||    
T  141911 actttttaaaagaataattgtttattttggtatgcttaaagagtg 141867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 967181 - 967074
Alignment:
Q  93 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagaca 192  Q
    ||||| |||||| ||||| |||||||||| ||| | ||| | ||||||||||||||||  | |  |||||||||||||||||||      | ||||||||    
T  967181 aaaattcatgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaatttggtatgcttaaagagt-----acgcggagaca 967087  T
Q  193 ctcgttaacaaga 205  Q
    |||||||||||||    
T  967086 ctcgttaacaaga 967074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 2816258 - 2816174
Alignment:
Q  92 aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 176  Q
    |||||| |||||||||| |   ||| |||| ||||| ||| | ||||||||||||||||||||| |||||  |||||||||||||    
T  2816258 aaaaatgcatgtaatcattgtcttgaaaattgaaatatttgatttttttaaagaataattgcttcttttgaaatgcttaaagagt 2816174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 1354375 - 1354442
Alignment:
Q  93 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||||| || ||||||||| ||| ||||||||||| ||||||||||||| | ||||||| ||| ||||    
T  1354375 aaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttcttttttt 1354442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 3263818 - 3263739
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||  || ||||||||||||||    
T  3263818 tgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttcttttgaaattcttaaagagtgccc 3263739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 3758266 - 3758195
Alignment:
Q  106 tcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    ||||| ||||| |||||||||| ||| |||||||||||||||||||| || ||||   ||| ||||||||||    
T  3758266 tcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtg 3758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 7211000 - 7210950
Alignment:
Q  101 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||| |||||||||||||| | ||| |||||||||||||||| ||||||||    
T  7211000 tgtattcaatacattggaatttgaagtgtttaacttttttaacgaataatt 7210950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 8247136 - 8247062
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 177  Q
    |||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||||    
T  8247136 taatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaagagtg 8247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 42337989 - 42338019
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaa 96  Q
    |||||||||||||||||||||||||||||||    
T  42337989 aaggactataaatagcaagtatttataaaaa 42338019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 16161504 - 16161411
Alignment:
Q  87 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 180  Q
    ||||||||||||  |||| | ||| ||||| |||| ||| | |||||||||||| || ||||||| | |  ||||| |||||||||||||||||    
T  16161504 tttataaaaatatgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtgccc 16161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 14042532 - 14042484
Alignment:
Q  103 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| |||||||    
T  14042532 taatcaatgcattggaaatcaaaatatttgacttttttaaataataatt 14042484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 39099961 - 39099889
Alignment:
Q  82 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttt-aacttttttaaa-gaataattg 152  Q
    |||||||||||||||||  |||| || || ||||| |||||||||| ||| |||||||||||| |||||||||    
T  39099961 aagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaatatttgaacttttttaaaggaataattg 39099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 189168 - 189064
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 172  Q
    |||||||  |||||||||| ||||||  |||||| |||  ||| ||||| ||||| ||||||||||||||||||||||||||| ||||   |||||||||    
T  189168 ataaataataagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattgcttattttaaaatgcttaaa 189069  T
Q  173 gagtg 177  Q
    |||||    
T  189068 gagtg 189064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 11664 - 11775
Alignment:
Q  66 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 165  Q
    ||||| ||||| ||| || ||||||| |||| |  |||||||||  |||| ||||||||||  ||| |||||| |||| | ||||||||| |||||  ||    
T  11664 aaggattataagtagtaactatttatgaaaaaatgtgtaatcaaagcatttgaaatcgaaacatttgacttttctaaaaattaattgcttattttgaaat 11763  T
Q  166 gcttaaagagtg 177  Q
    ||||||||||||    
T  11764 gcttaaagagtg 11775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 39004 - 38917
Alignment:
Q  73 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 160  Q
    |||||||| || |||||||||||||||||| |||||||   || |||||| | ||||||||| ||||||||  |||||| ||| ||||    
T  39004 ataaatagtaaatatttataaaaatacatgcaatcaatgtcttagaaatcaacatgtttaacatttttaaaagataattacttatttt 38917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 219275 - 219211
Alignment:
Q  87 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 151  Q
    |||||||||||| ||||| | ||| |||||||||| ||| | ||| |||||| ||||||||||||    
T  219275 tttataaaaatatatgtatttaatgcattggaaattgaactatttgacttttgtaaagaataatt 219211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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