View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_3 (Length: 562)
Name: NF0876_low_3
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 29 - 540
Target Start/End: Complemental strand, 5054989 - 5054475
Alignment:
| Q |
29 |
agatagtagttcatccttcaacaatgggtgttctttggtgtagtctaagaacccgtagacgagaaacatgatcttttgtgggtgtaatcacttaaataaa |
128 |
Q |
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| T |
5054989 |
agatagtagttcatccttcaacactgggtgttctttggtgtagtctaagaacccgcagatgagaaacatgatcttttgtgggtgcaatcacttaaataaa |
5054890 |
T |
|
| Q |
129 |
aagagaatcattgtcacacgtgcaagttggccttcat---cttataagttaaacatacaatgaatcaagcacaaacgattaatcatacgtctaatcagtt |
225 |
Q |
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||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||| | |
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| T |
5054889 |
aagggaatcattgtcacacgtgcaagttggccatcatgatcttataagttaaacatacgacgaatcaagcacaaacgattgatcatacatctaatcagct |
5054790 |
T |
|
| Q |
226 |
aaacacgaaatttcttatcacgtccatacgccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccaca |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054789 |
aaacacgaaatttcgtatcacgtccatacgccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccaca |
5054690 |
T |
|
| Q |
326 |
tatattaaactacggaaactaaataaaataataacacattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcag |
425 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054689 |
tatattaaactacggaaactaaataaaataagaacccattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcag |
5054590 |
T |
|
| Q |
426 |
ctattcaagaaatgtagttagtacgttactttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagca |
525 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054589 |
ctattcaagaaatttagttagtacgttactttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagca |
5054490 |
T |
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| Q |
526 |
ggtgcatgtgatgat |
540 |
Q |
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||||||||||||||| |
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| T |
5054489 |
ggtgcatgtgatgat |
5054475 |
T |
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