View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_33 (Length: 209)
Name: NF0876_low_33
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6093121 - 6092988
Alignment:
| Q |
1 |
aatcatgatcaattgataaatgaagaagcctgatgattccaaccatgcatgactttgatccatcaccaaaatttcattctaattcctcctaccaactcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093121 |
aatcatgatcaattgataaatgaagaagcctgatgattccaaccatgcatgactttgatccatcaccaaaatttcattctaattcctcctaccaactcta |
6093022 |
T |
|
| Q |
101 |
attgaatgttaaccctctcacctctccttctctg |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
6093021 |
attgaatgttaaccctctcacctctccttctctg |
6092988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 15391971 - 15391894
Alignment:
| Q |
58 |
atccatcaccaaaatttcattctaattcctcctaccaactctaattgaatgttaaccctctcacctctccttctctgc |
135 |
Q |
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||||||||||||||| ||||||||||| | ||||||| |||||||||| |||| | ||||||||||||||||||||| |
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| T |
15391971 |
atccatcaccaaaatctcattctaattgcccctaccacctctaattgagtgttgaatctctcacctctccttctctgc |
15391894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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