View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0876_low_36 (Length: 203)
Name: NF0876_low_36
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3778310 - 3778420
Alignment:
| Q |
1 |
ggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccgtaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3778310 |
ggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagaaaaaaaccgtaagca |
3778409 |
T |
|
| Q |
101 |
ggactagatcg |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
3778410 |
ggactagatcg |
3778420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3707546 - 3707463
Alignment:
| Q |
1 |
ggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaag |
84 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3707546 |
ggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagacaagttcttggaatgtagaag |
3707463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3770649 - 3770732
Alignment:
| Q |
1 |
ggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaag |
84 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3770649 |
ggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagacaagttcttggaatgtagaag |
3770732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3719055 - 3718972
Alignment:
| Q |
1 |
ggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaag |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| |
|
|
| T |
3719055 |
ggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacgagtttttgcaatgttgaag |
3718972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2704 times since January 2019
Visitors: 6167