View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_6 (Length: 419)
Name: NF0876_low_6
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 4677885 - 4677472
Alignment:
| Q |
9 |
gaacaatatgagtagactttgatgaatcgatgaaaaagactatggat----ccatagnnnnnnnnatcttgtcaacgaatgtctaaattttttgaaaaga |
104 |
Q |
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| T |
4677885 |
gaacaaaatgagtaaactttgatgaatcgataaaaaagactatggatggatccatagttttttttatcttgtcaacgaatgtctaaaatatttgagaaga |
4677786 |
T |
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| Q |
105 |
agcatgatgtgagacttccatcctaacaaactacgttagaaaaacatttataattagtttatcatactatatatttataacaaaattnnnnnnnnttgaa |
204 |
Q |
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| T |
4677785 |
agcatgatgtgagacttccatcctaacaaactatgttagaaaaacatttataattagtttatcatactatatctttataacaaaattaaaaaaaattgaa |
4677686 |
T |
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| Q |
205 |
ggtctttttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaataggtacagcattgatgtatttgt |
304 |
Q |
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| T |
4677685 |
ggtctttttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaatagatacagcattgatgtatttgt |
4677586 |
T |
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| Q |
305 |
gtccaaaggttaaattgtatagtgaactaaatatctcactcaatagacaatcctttaacaaaggatcaagccaaaacaatgtcgactcatcgtcacttaa |
404 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4677585 |
gtcc-aaggttaaattgtatagtgaactaaatatctcactcaatagacaaccctttaacaaaggatcaagccaaaacaatgtcgactcatcgtcacttga |
4677487 |
T |
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| Q |
405 |
taatctatcgcataa |
419 |
Q |
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|||||| |||||||| |
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| T |
4677486 |
taatctctcgcataa |
4677472 |
T |
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