View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_7 (Length: 416)
Name: NF0876_low_7
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 40510765 - 40511060
Alignment:
| Q |
16 |
atatcagttgta-agcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacatt |
114 |
Q |
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| T |
40510765 |
atatcagttgtagagcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacatt |
40510864 |
T |
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| Q |
115 |
aacattaaca------attacaacaatttattactttagtatatactgttgcacattccccttttgttacnnnnnnncaaagtacatcacattcatgcaa |
208 |
Q |
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| T |
40510865 |
aacattaacattaacaattacaacaatttattactttagtatatactgttgcacattccccttttgttacaaaaaaacaaagtacatcacattcatgcaa |
40510964 |
T |
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| Q |
209 |
gttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
304 |
Q |
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| T |
40510965 |
gttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
40511060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 40511118 - 40511167
Alignment:
| Q |
367 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaatta |
416 |
Q |
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| T |
40511118 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaatta |
40511167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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