View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_high_1 (Length: 632)
Name: NF0877_high_1
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 42366154 - 42365539
Alignment:
| Q |
1 |
ttcagcgaaagctgagaaggcttaaggacaaagaaattgatcatggtcgccacatgaagggatccaataggttgaaatttagagaggcagtattgccatt |
100 |
Q |
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||||| |||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42366154 |
ttcagagaaagctgagaaagattaaggaaaaagaaactgatcatggtcgccacatgaagggatccaataggttgaaatttagagaggcagtattgccatt |
42366055 |
T |
|
| Q |
101 |
acccactgaggatgaggaggatgaaactgaaatctcccctcagaaggaggaagaagaagaacttattgaagaggttggtaccttaattgttgatattaat |
200 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42366054 |
acccac---------ggaggatgaaactgaaatctccccacagaaggaggaagaagaagaacttattgaagaggttggtaccttaattgttgatattaat |
42365964 |
T |
|
| Q |
201 |
cattatgtagctagaagtatcatattaggctgtgtcattctagaaatataactgaaaattatcctgcaaactgattagaaaaacttcaatttcacgtttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42365963 |
cattatgtagctagaagtatcatattaggctgtgtcattctagaaatataattgaaaattatcctccaaactgattagaaaaacttcaatttcacgtttg |
42365864 |
T |
|
| Q |
301 |
gaagtagatttgcagtttgctcttacactatttatgttgattgatgatatatcattacttatcaatagattctgctgttgttttgttatttattgtttat |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |
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| T |
42365863 |
gaagtagatttgcagtttgctcttacactgtttatgttgattgatgatatatcattacttatcaagagatgctgctgctgttttgttatttattgtttat |
42365764 |
T |
|
| Q |
401 |
tttccttacattgcacttactctagttgtgaggctgttttacaggttgttcggacaaaatacttcgacatgcctcctttaactgtgtttgaagcaattga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42365763 |
tttccttacattgcacttactctagttgtgaggctgttttacaggttgttcggacaaaatacttcgacatgcctcctttaactgtgtttgaagcaattga |
42365664 |
T |
|
| Q |
501 |
ccagttggaaatggttgctcatgacttctatgcttttcgaaatgaagaatctggtcagtaaatactactgttttagctatctttggtttgaccatgtttc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42365663 |
ccagttggaaatggttgctcatgacttctatgcttttcgaaatgaagaatctggtcagtaaatactactgttttagctatctttggtttgaccatgtttc |
42365564 |
T |
|
| Q |
601 |
tcactacattttattgtctctgctc |
625 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
42365563 |
tcactacattttattgtctcggctc |
42365539 |
T |
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