View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_high_11 (Length: 246)
Name: NF0877_high_11
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4488327 - 4488186
Alignment:
| Q |
1 |
attggtcgttggagcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttatta |
100 |
Q |
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| T |
4488327 |
attggtcgttggagcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttatta |
4488228 |
T |
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| Q |
101 |
tcatcaatagtgctaagatcaaactggattcttcctcaaata |
142 |
Q |
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| T |
4488227 |
tcaccaatagtgctaaaatcaaactggattcttcctcaaata |
4488186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
| Q |
18 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag |
117 |
Q |
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| T |
19023911 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag |
19023812 |
T |
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| Q |
118 |
atcaaactggattcttcctcaaata |
142 |
Q |
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| T |
19023811 |
atcaaactggattcatcctcaaata |
19023787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
| Q |
83 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
142 |
Q |
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| T |
14244914 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
14244855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
| Q |
83 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
142 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6355464 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
6355405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
| Q |
83 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
142 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
1409608 |
actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata |
1409549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1409649 - 1409606
Alignment:
| Q |
1 |
attggtcgttggagcttcaatgggtggcttatttaaaaggtact |
44 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1409649 |
attggtcgttggagcttcaaccggtggcttatttaaaaggtact |
1409606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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