View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_high_2 (Length: 467)
Name: NF0877_high_2
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 150 - 321
Target Start/End: Complemental strand, 35455507 - 35455337
Alignment:
| Q |
150 |
ttaaatgattagtaactaataattaccaatttgtgtttctttaagaaatctgtaatgtcgagttcgagccaatgaccacgattgtgaaatagtttctacc |
249 |
Q |
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| T |
35455507 |
ttaaatgattagtaactaataattacctatgtgtgtttctttatgaagtctgtaatgtcgagttcgagccaatgaccatgtttgtgaaataattccta-c |
35455409 |
T |
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| Q |
250 |
cctatgcttatcaaaatgctttgaagttgtagtaattaaatttgcgaatttaatgcagagatatagtgcatt |
321 |
Q |
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| T |
35455408 |
cttatgcttatcaaaatgcttttaaattgtagtaattaaatttgcgaatttaatgcagagatatagtgcatt |
35455337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 317 - 440
Target Start/End: Complemental strand, 35455240 - 35455116
Alignment:
| Q |
317 |
gcattaaatagacatgtgacaatacaagaaggtgtattttgtaattttccatatcctccttgttccatgctcatcatcttgaacatctttttgc-aagca |
415 |
Q |
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| T |
35455240 |
gcattaaatagacatgtgacaatacaagaaggtgtattttgtaattttccatatcctccttgttccatgctcatcatcttgaacatctttttgcaaagca |
35455141 |
T |
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| Q |
416 |
tataagaagaaaaatgatgatattg |
440 |
Q |
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| T |
35455140 |
tataagaagaaaaaggatgatattg |
35455116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 2958456 - 2958373
Alignment:
| Q |
16 |
atattcgaggtttaaacattgaataggtaatcaataaatggtacaaaagatttattaggaggtgaatatgtacaagagatttagt |
100 |
Q |
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| T |
2958456 |
atatttgacgtttaaacattgaataggtactcaataaatggtacaaaagatttatta-gatgtgaatatgtacaagagatttagt |
2958373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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