View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_high_4 (Length: 347)
Name: NF0877_high_4
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 339
Target Start/End: Complemental strand, 2083535 - 2083221
Alignment:
| Q |
26 |
tggttttaggcatgcaatactgtgtacatatgctgtagtggattagtctctcaagtttcagtttcagctagactagtgtaaagttgattttcgaataatt |
125 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2083535 |
tggttttaggcatgcaatactgtgtgcatgtgctgtagtggattagtctctcaagtttcagtttcagctagactagtgtaaagttgatttttgaataatt |
2083436 |
T |
|
| Q |
126 |
gcatttgga-cacaacattgcaaagatgggggtgtgtgtaaactggtaacaatgtgccctttttcatattgttgtttttgataactttattgtaaatttg |
224 |
Q |
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||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2083435 |
gcatttggaacaaaacattgcaaagatgggg-tgtgtgtaaactggtaacaatgtgccctttttcatattgttgtttttgataactttattgtaaatttg |
2083337 |
T |
|
| Q |
225 |
cctcaattttatggtttactgatctgttatgta-tgtttggaggaatttcatcgtgcttttgattaatgggannnnnnnnngtcctccaaatcaagcttt |
323 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
2083336 |
cctcaattttatggcttactgatctgttatgtattgtttggaggaatttcattgtgcttttgattaatgggatttttttttgtcctccaaatcaagcttt |
2083237 |
T |
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| Q |
324 |
cgactcaacctatgat |
339 |
Q |
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||||||||||| |||| |
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| T |
2083236 |
cgactcaacctgtgat |
2083221 |
T |
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