View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_high_5 (Length: 335)
Name: NF0877_high_5
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 24695228 - 24695453
Alignment:
| Q |
30 |
ctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgcactttaaaatcaccagaa |
129 |
Q |
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| T |
24695228 |
ctaacacactgctatgataagacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacctgtgcactttaaaatcaccagaa |
24695327 |
T |
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| Q |
130 |
caatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatctttaatttaatacgcaac |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
24695328 |
caatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccactgcacaatgttgtaattattgatatttaatttaatacgcaac |
24695427 |
T |
|
| Q |
230 |
cagttccaagaataaactttcatctc |
255 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24695428 |
cagttccaagaataaactttcatctc |
24695453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 24707761 - 24707987
Alignment:
| Q |
30 |
ctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgcactttaaaatcaccaga |
128 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||| |||||||||||| |
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| T |
24707761 |
ctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggtatgaattaagtcaattatgcacttcaaaatcaccaga |
24707860 |
T |
|
| Q |
129 |
acaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatctttaatttaatacgcaa |
228 |
Q |
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|| |||| |||||||||| ||||||| ||||||| || | |||| |||||||| | || ||||| ||||||| | || ||| ||||||| | ||| |
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| T |
24707861 |
accatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgcacaatattgtaatcgtgaatatttgatttaatccacaa |
24707960 |
T |
|
| Q |
229 |
ccagttccaagaataaactttcatctc |
255 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24707961 |
ccagttccaagaataaactttcatctc |
24707987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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