View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0877_high_8 (Length: 290)

Name: NF0877_high_8
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0877_high_8
NF0877_high_8
[»] chr7 (24 HSPs)
chr7 (134-290)||(40190254-40190411)
chr7 (33-119)||(39276617-39276703)
chr7 (33-119)||(39651145-39651231)
chr7 (33-119)||(11840444-11840530)
chr7 (33-119)||(21600967-21601053)
chr7 (33-119)||(21670789-21670875)
chr7 (53-119)||(29467755-29467821)
chr7 (33-124)||(29684110-29684201)
chr7 (49-119)||(17169028-17169098)
chr7 (33-101)||(688085-688153)
chr7 (33-97)||(9143502-9143566)
chr7 (33-101)||(49146119-49146187)
chr7 (53-119)||(3791483-3791549)
chr7 (33-119)||(27737738-27737824)
chr7 (49-119)||(48529946-48530016)
chr7 (53-107)||(35157012-35157066)
chr7 (53-107)||(44804536-44804590)
chr7 (33-107)||(34872185-34872259)
chr7 (33-101)||(4848370-4848439)
chr7 (53-101)||(24684650-24684698)
chr7 (49-101)||(31899998-31900050)
chr7 (251-286)||(38744418-38744453)
chr7 (53-92)||(42684816-42684855)
chr7 (53-89)||(47175507-47175543)
[»] chr4 (33 HSPs)
chr4 (33-119)||(3821195-3821281)
chr4 (49-137)||(52799011-52799099)
chr4 (33-119)||(39716714-39716800)
chr4 (33-101)||(5752473-5752541)
chr4 (33-119)||(15704115-15704201)
chr4 (33-119)||(35498529-35498615)
chr4 (53-119)||(29712373-29712440)
chr4 (33-108)||(30529275-30529350)
chr4 (33-107)||(13171641-13171715)
chr4 (53-119)||(35716315-35716381)
chr4 (33-134)||(46104167-46104269)
chr4 (33-107)||(50119954-50120028)
chr4 (53-107)||(51347504-51347558)
chr4 (53-119)||(53991568-53991634)
chr4 (33-101)||(12682752-12682820)
chr4 (56-119)||(24948306-24948369)
chr4 (33-107)||(3757742-3757816)
chr4 (33-107)||(17730449-17730523)
chr4 (53-107)||(24547347-24547401)
chr4 (53-119)||(39406248-39406314)
chr4 (53-107)||(20588578-20588632)
chr4 (33-107)||(36743198-36743272)
chr4 (69-119)||(47560251-47560301)
chr4 (53-101)||(8956938-8956986)
chr4 (53-101)||(8986910-8986958)
chr4 (53-101)||(37349808-37349856)
chr4 (53-113)||(578621-578681)
chr4 (33-101)||(2116111-2116179)
chr4 (53-101)||(9888906-9888954)
chr4 (33-100)||(16896008-16896075)
chr4 (53-101)||(35833430-35833478)
chr4 (53-107)||(43021908-43021962)
chr4 (53-101)||(50033703-50033750)
[»] chr6 (14 HSPs)
chr6 (53-136)||(4897511-4897593)
chr6 (33-119)||(15045543-15045629)
chr6 (33-101)||(6969292-6969360)
chr6 (49-119)||(1218522-1218592)
chr6 (49-119)||(24443931-24444001)
chr6 (33-101)||(4107976-4108044)
chr6 (33-113)||(9981256-9981336)
chr6 (49-119)||(18323839-18323909)
chr6 (33-93)||(28573825-28573885)
chr6 (57-107)||(9737773-9737823)
chr6 (33-100)||(33328274-33328341)
chr6 (35-88)||(25529276-25529329)
chr6 (33-100)||(35133197-35133263)
chr6 (43-117)||(34316957-34317031)
[»] scaffold0009 (2 HSPs)
scaffold0009 (33-119)||(225439-225525)
scaffold0009 (53-107)||(108563-108617)
[»] chr5 (17 HSPs)
chr5 (33-119)||(3088028-3088114)
chr5 (33-119)||(25698714-25698800)
chr5 (33-119)||(30140506-30140592)
chr5 (33-119)||(33709810-33709896)
chr5 (49-119)||(41689279-41689349)
chr5 (33-107)||(30754425-30754499)
chr5 (53-107)||(36886985-36887039)
chr5 (53-119)||(12592485-12592551)
chr5 (53-101)||(6305466-6305514)
chr5 (53-101)||(43138563-43138611)
chr5 (37-100)||(12422345-12422408)
chr5 (64-119)||(26602196-26602251)
chr5 (53-107)||(17643402-17643456)
chr5 (53-101)||(754461-754509)
chr5 (49-119)||(34715607-34715670)
chr5 (53-119)||(42977849-42977912)
chr5 (33-101)||(34727331-34727400)
[»] chr2 (14 HSPs)
chr2 (33-119)||(28607225-28607311)
chr2 (33-119)||(10050186-10050272)
chr2 (53-119)||(17836971-17837037)
chr2 (49-119)||(2952761-2952831)
chr2 (49-119)||(9545788-9545858)
chr2 (33-119)||(24520870-24520956)
chr2 (53-119)||(32677200-32677266)
chr2 (53-119)||(9920926-9920992)
chr2 (33-119)||(18096495-18096581)
chr2 (33-107)||(19486205-19486279)
chr2 (49-119)||(4292795-4292865)
chr2 (33-107)||(10876568-10876640)
chr2 (33-117)||(19486108-19486192)
chr2 (53-107)||(42781027-42781081)
[»] chr1 (24 HSPs)
chr1 (33-119)||(16300393-16300479)
chr1 (53-119)||(33075673-33075739)
chr1 (33-119)||(52306073-52306159)
chr1 (36-119)||(47134708-47134791)
chr1 (49-119)||(1367295-1367365)
chr1 (53-119)||(22198924-22198990)
chr1 (49-119)||(4890102-4890172)
chr1 (49-119)||(17364616-17364686)
chr1 (49-119)||(29188313-29188383)
chr1 (53-119)||(29844898-29844964)
chr1 (49-119)||(33359704-33359774)
chr1 (33-107)||(46626321-46626395)
chr1 (53-119)||(1826797-1826863)
chr1 (33-101)||(5426238-5426306)
chr1 (33-107)||(19322341-19322415)
chr1 (53-116)||(10766193-10766256)
chr1 (57-119)||(42678378-42678440)
chr1 (53-102)||(38894776-38894825)
chr1 (53-101)||(28570747-28570795)
chr1 (33-100)||(19400754-19400821)
chr1 (33-100)||(50557850-50557916)
chr1 (49-107)||(10698131-10698189)
chr1 (33-100)||(51971269-51971335)
chr1 (53-119)||(43116052-43116118)
[»] scaffold0385 (1 HSPs)
scaffold0385 (53-135)||(8317-8397)
[»] scaffold0057 (1 HSPs)
scaffold0057 (49-119)||(20592-20662)
[»] chr3 (22 HSPs)
chr3 (33-101)||(18682511-18682579)
chr3 (53-119)||(11955542-11955608)
chr3 (33-119)||(22519194-22519279)
chr3 (33-101)||(8393585-8393653)
chr3 (33-108)||(19368938-19369013)
chr3 (53-119)||(22473648-22473714)
chr3 (33-107)||(29530558-29530632)
chr3 (33-98)||(26777847-26777912)
chr3 (33-119)||(19895642-19895728)
chr3 (53-107)||(35855220-35855274)
chr3 (33-107)||(55297340-55297414)
chr3 (35-100)||(28981816-28981881)
chr3 (33-101)||(4139344-4139412)
chr3 (33-101)||(53800521-53800589)
chr3 (53-107)||(8528120-8528174)
chr3 (33-100)||(40831923-40831990)
chr3 (53-107)||(26102167-26102221)
chr3 (49-119)||(33872209-33872279)
chr3 (59-100)||(11602187-11602228)
chr3 (49-119)||(9563230-9563300)
chr3 (43-92)||(2847341-2847390)
chr3 (53-90)||(15321260-15321297)
[»] chr8 (25 HSPs)
chr8 (33-119)||(18378799-18378885)
chr8 (33-107)||(36776420-36776494)
chr8 (33-102)||(41972977-41973046)
chr8 (33-107)||(24053930-24054004)
chr8 (33-135)||(7389185-7389288)
chr8 (33-107)||(25346050-25346124)
chr8 (33-100)||(25620711-25620778)
chr8 (33-100)||(40616091-40616158)
chr8 (53-107)||(40587709-40587763)
chr8 (33-107)||(41534245-41534319)
chr8 (33-101)||(4466417-4466485)
chr8 (53-101)||(8760723-8760771)
chr8 (53-101)||(25836282-25836330)
chr8 (50-119)||(41152672-41152743)
chr8 (33-107)||(9472168-9472241)
chr8 (33-107)||(42245729-42245803)
chr8 (33-101)||(25616494-25616563)
chr8 (53-101)||(1942811-1942859)
chr8 (53-101)||(8162792-8162840)
chr8 (33-100)||(44389002-44389069)
chr8 (53-100)||(45435013-45435060)
chr8 (53-101)||(32844171-32844219)
chr8 (252-290)||(42899975-42900013)
chr8 (43-119)||(19243239-19243315)
chr8 (43-119)||(19316423-19316499)
[»] scaffold0759 (1 HSPs)
scaffold0759 (33-101)||(5888-5956)
[»] scaffold0051 (1 HSPs)
scaffold0051 (33-101)||(62084-62152)
[»] scaffold0069 (1 HSPs)
scaffold0069 (50-119)||(11777-11846)
[»] scaffold0381 (1 HSPs)
scaffold0381 (53-101)||(9591-9639)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 290
Target Start/End: Original strand, 40190254 - 40190411
Alignment:
Q  134 ataataaagtgatttaaaaactttataaagttagnnnnnnnn--tgattaattcaattaaaatatattgatgtgccgctgcaacatcattctcttcggcg 231  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40190254 ataataaagtgatttaaaaactttataaagttagaaaaaaaaaatgattaattcaattaaaatatattgatgtgccgctgcaacatcattctcttcggcg 40190353  T
Q  232 agttctccttcnnnnnnnnccgaatctcgattctttcagcgttcaattcaacccaatct 290  Q
    |||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  40190354 agttctccttc-tttttttccgaatctcgattctttcagcgttcaattcaacccaatct 40190411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 39276703 - 39276617
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39276703 aaactcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 39276617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 39651145 - 39651231
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39651145 aaactcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 39651231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 11840444 - 11840530
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  11840444 aaactcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatagaagtata 11840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 21600967 - 21601053
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  21600967 aaactcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatagaagtata 21601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 21670789 - 21670875
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||| ||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21670789 aaactcaacaaatttgtaatttaccaaattatcctttataggggcaaaatagtaaattcaagggacatttcttttaatataagtata 21670875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 29467821 - 29467755
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467821 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 29467755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 29684110 - 29684201
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatagtata 124  Q
    |||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |||||    
T  29684110 aaactcaaccaattagtagattaccaaattgccccttataggggtaaaatggtaaattcaaggcacatttctttttatattagtatggtata 29684201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 17169098 - 17169028
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17169098 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 17169028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 688153 - 688085
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  688153 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacatt 688085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 9143566 - 9143502
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaggga 97  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9143566 aaactcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaaggga 9143502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 49146119 - 49146187
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  49146119 aaactcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacatt 49146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 3791549 - 3791483
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  3791549 ttaccaaattgccccttataggggcaaaatggtaaatccataggacatttcttttaatataagtata 3791483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 27737738 - 27737824
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| |||||||||||||||  || ||||||||| ||||||||||||||||||||| |||||||| ||| |||||||    
T  27737738 aaactcaaccaattagtaatttaccaaattatcctttataggggtaaaatggtaaattcaagggacttttctttttatagaagtata 27737824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 48529946 - 48530016
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  48529946 taatttaccaaattgcccccaataggggcaaaatggtaatttcaaaggacatttcttttaatataagtata 48530016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 35157012 - 35157066
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35157012 ttaccaaattgccccttataggggcaaaatggtaaattcaagtgacatttctttt 35157066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 44804590 - 44804536
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44804590 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttctttt 44804536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 34872259 - 34872185
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  34872259 aaactcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaagttcaaaggacatttctttt 34872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 4848439 - 4848370
Alignment:
Q  33 aaactcaaccaattt-gtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||    
T  4848439 aaactcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacatt 4848370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 24684650 - 24684698
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  24684650 ttaccaaattgccccttatagaggcaaaatggtaaattcatgggacatt 24684698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 31899998 - 31900050
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  31899998 taatctaccaaattgcccctaataggggcaaaattgtaaattcaaaggacatt 31900050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 38744418 - 38744453
Alignment:
Q  251 ccgaatctcgattctttcagcgttcaattcaaccca 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  38744418 ccgaatctcgattctttcagcgttcaattcaaccca 38744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 42684855 - 42684816
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattca 92  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  42684855 ttactaaaatgccccttataggggcaaaatggtaaattca 42684816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 47175507 - 47175543
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaat 89  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  47175507 ttaccaaattgccccttctaggggcaaaattgtaaat 47175543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 3821195 - 3821281
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3821195 aaactcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtata 3821281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 52799099 - 52799011
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatagtataagtatatagataa 137  Q
    |||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  52799099 taatttaccaaattgcccctaataggggtaaaatggtaaatttaaaggacatttcttttaatataagtataatataagtatatagataa 52799011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 39716714 - 39716800
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39716714 aaactcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 39716800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 5752541 - 5752473
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5752541 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 5752473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 15704201 - 15704115
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||| ||||| |||||||||||    
T  15704201 aaactcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtata 15704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 35498529 - 35498615
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||||| |||||||||| |||| ||||||    
T  35498529 aaactcaaccaattagtaatttaccaaattgtcctttataggggcaaaatgataaattcaagggccatttctttttatattagtata 35498615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 29712440 - 29712373
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttc-ttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  29712440 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttctttttaatataagtata 29712373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 30529275 - 30529350
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttta 108  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30529275 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggatatttctttta 30529350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 13171715 - 13171641
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13171715 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttatttt 13171641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 35716315 - 35716381
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  35716315 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtata 35716381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 46104269 - 46104167
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagta-tagtataagtatat 131  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |||||||   ||| |||| |||| |||||| |||||||    
T  46104269 aaactcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtattagtatat 46104170  T
Q  132 aga 134  Q
    |||    
T  46104169 aga 46104167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 50119954 - 50120028
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50119954 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacattcctttt 50120028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 51347558 - 51347504
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51347558 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 51347504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 53991568 - 53991634
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  53991568 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtata 53991634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 12682752 - 12682820
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  12682752 aaactcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacatt 12682820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 24948306 - 24948369
Alignment:
Q  56 ccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  24948306 ccaaattgccccttataggagcaaaatggtaaattcaaaggacatttctttttatataagtata 24948369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 3757816 - 3757742
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3757816 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatgaacatttctttt 3757742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 17730523 - 17730449
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  17730523 aaactcaaccaattagtagattaccaaattgccccttataggagcaaaatggtaaattcaaagcacatttctttt 17730449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 24547401 - 24547347
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24547401 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttctttt 24547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 39406248 - 39406314
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  39406248 ttaccaaattaccccttataggggctaaatggtaaattcaaggaacatttctttttatataagtata 39406314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 20588632 - 20588578
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20588632 ttaccaaattgccccttatagaggcaaaatggtgaattcaagggacatttctttt 20588578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 36743198 - 36743272
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  36743198 aaactcaaccaataagtagattaccaaattgccccttatagagacaaaatggtaaatttaagggacatttctttt 36743272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 47560251 - 47560301
Alignment:
Q  69 tataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47560251 tataggggcaaaatggtaaattcaagggacattacttttaatataagtata 47560301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 8956986 - 8956938
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8956986 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 8956938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 8986958 - 8986910
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8986958 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 8986910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 37349856 - 37349808
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37349856 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 37349808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 578621 - 578681
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatata 113  Q
    ||||||||||| |||||||||||||||||||||||||  | | ||||||||||||||||||    
T  578621 ttaccaaattgtcccttataggggcaaaatggtaaatcaatgagacatttcttttaatata 578681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 2116179 - 2116111
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||| ||||||||||||||||||||  || || |||||||||||| |||| |||||||    
T  2116179 aaactcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacatt 2116111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 9888906 - 9888954
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9888906 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacatt 9888954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 16896075 - 16896008
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    ||||||||||||||  ||  ||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  16896075 aaactcaaccaattaatagattaccaaatagccccttataagggcaaaattgtaaattcaagggacat 16896008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 35833430 - 35833478
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  35833430 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacatt 35833478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 43021962 - 43021908
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||| ||| |||| ||||| ||||||||||||||| |||||||||||    
T  43021962 ttaccaaattgcacctaatagaggcaagatggtaaattcaaggaacatttctttt 43021908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 50033750 - 50033703
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||| ||||| |||||||||||||||||||  |||||||    
T  50033750 ttaccaaattgccc-ttataagggcaaaatggtaaattcataggacatt 50033703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 4897511 - 4897593
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatagtataagtatatagata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4897511 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata-tataagtatatagata 4897593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 15045543 - 15045629
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15045543 aaactcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 15045629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 6969292 - 6969360
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969292 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 6969360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 1218592 - 1218522
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1218592 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 1218522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 24444001 - 24443931
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  24444001 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtata 24443931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 4108044 - 4107976
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||    
T  4108044 aaactcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacatt 4107976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 9981256 - 9981336
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatata 113  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||| |||||    
T  9981256 aaactcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacatttccttttatata 9981336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 18323909 - 18323839
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||   | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18323909 taatttaccaaattgcttttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 18323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 28573825 - 28573885
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaa 93  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  28573825 aaactcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaa 28573885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 9737773 - 9737823
Alignment:
Q  57 caaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9737773 caaattgccccttatagggacaaaatggtaaattcaagggacatttctttt 9737823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 33328274 - 33328341
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||| |||   |||||||||||||||| |||| ||||||||||||||| || ||||||    
T  33328274 aaactcaaccaattagtagactaccaaattgccccttgtaggagcaaaatggtaaatttaaaggacat 33328341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 25529329 - 25529276
Alignment:
Q  35 actcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaa 88  Q
    |||||||||||| |||  |||||||||||||||||||||| ||||||| |||||    
T  25529329 actcaaccaattagtagattaccaaattgccccttataggagcaaaatcgtaaa 25529276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 35133263 - 35133197
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||| |||  ||| |||||||||| |||||| |||||||||||||||| || ||||||    
T  35133263 aaactcaaccaattagtagattatcaaattgccc-ttatagaggcaaaatggtaaatttaaaggacat 35133197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 34317031 - 34316957
Alignment:
Q  43 aatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagta 117  Q
    |||| |||| ||||||||||||||||  ||||||||||| |||||| |||| ||||||  ||||| |||| ||||    
T  34317031 aattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta 34316957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 225525 - 225439
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  225525 aaacttaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatataagtata 225439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 108617 - 108563
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  108617 ttaccaaattaccccttatggggacaaaatggtaaattcaagggacatttctttt 108563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 3088028 - 3088114
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3088028 aaactcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtata 3088114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 25698714 - 25698800
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25698714 aaactcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 25698800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 30140592 - 30140506
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30140592 aaactcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 30140506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 33709810 - 33709896
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  33709810 aaactcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtata 33709896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 41689349 - 41689279
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41689349 taatttaccaaattgcccataataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 41689279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 30754499 - 30754425
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30754499 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaaaggacatttctttt 30754425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 36886985 - 36887039
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36886985 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 36887039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 12592485 - 12592551
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||    
T  12592485 ttaccaaattgccccttataggggtaaactggtaaattcatgggacatttctttttatataagtata 12592551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 6305466 - 6305514
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6305466 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 6305514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 43138563 - 43138611
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43138563 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 43138611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 12422345 - 12422408
Alignment:
Q  37 tcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  12422345 tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacat 12422408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 26602196 - 26602251
Alignment:
Q  64 ccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  26602196 ccccttataagggtaaaatggtaaattcaagggacatttctttttatataagtata 26602251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 17643402 - 17643456
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  17643402 ttaccaaattgccccttataagggcaaaatgataaattcaagggacatttatttt 17643456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 754461 - 754509
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  754461 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacatt 754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 34715670 - 34715607
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||    
T  34715670 taatttaccaaattgcccctaataggggcaaaatggtaa-------ggacatttcttttaatataagtata 34715607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 42977849 - 42977912
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||   ||| ||||||||  ||| |||||||||||    
T  42977849 ttaccaaattgccccttataggggcaaaatggtaa---caatggacattttcttttatataagtata 42977912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 34727331 - 34727400
Alignment:
Q  33 aaactcaaccaattt-gtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||| |||||||| ||||||||| ||| ||  | |||||||||||| |||| |||||||    
T  34727331 aaactcaaccaattttgtaatttatcaaattgcctcttctaaagacaaaatggtaaaatcaatggacatt 34727400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 28607311 - 28607225
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  28607311 aaactcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtata 28607225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 10050186 - 10050272
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10050186 aaactcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 10050272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 17837037 - 17836971
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17837037 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 17836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 2952831 - 2952761
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2952831 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 2952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 9545788 - 9545858
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9545788 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 9545858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 24520956 - 24520870
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||  ||||||||||||||||||||||| |||||||||||    
T  24520956 aaactcaaccaattagtaatttaccaaattgctccttatagaggcaaaattataaattcaagggacatttctttttatataagtata 24520870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 32677200 - 32677266
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32677200 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttaatataagtata 32677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 9920926 - 9920992
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9920926 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtata 9920992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 18096581 - 18096495
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||| ||||||||  |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  18096581 aaacttaaccaattaataatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtata 18096495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 19486279 - 19486205
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19486279 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 19486205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 4292795 - 4292865
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  4292795 taatttaccaaattgcccttaataggagcaaaatggtaaattcaaaggacatttcttttaatataagtata 4292865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 10876568 - 10876640
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10876568 aaactcaaccaataagtagattaccaaattgcccctta--ggggcaaaatggtaaattcaagggacatttctttt 10876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 19486108 - 19486192
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagta 117  Q
    |||||||||||||  |||  ||||||||||||||||||||||||||||||| ||||||||| ||| ||||  ||| |||||||||    
T  19486108 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatgataaattcaatggatattttcttttatataagta 19486192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 42781081 - 42781027
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  42781081 ttaccaaattgccccttacagggacaaaatgataaattcaagggacatttctttt 42781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 16300479 - 16300393
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  16300479 aaactcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtata 16300393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 33075673 - 33075739
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33075673 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 33075739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 52306159 - 52306073
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  52306159 aaactcaaccaattagtaatttatcaaattgccccttataggggcaaaatggtaaattaaagggatatttctttttatataagtata 52306073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 47134791 - 47134708
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtata 47134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 1367365 - 1367295
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1367365 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 1367295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 22198924 - 22198990
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22198924 ttaccaaattgccccttataggggcaaaatgataaattcaagggacatttcttttaatataagtata 22198990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 4890172 - 4890102
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  4890172 taatttaccaaattgcccctaatagaggcaaaatggtaaattcaaaggacatttcttttaatataagtata 4890102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 17364616 - 17364686
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  17364616 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtata 17364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 29188313 - 29188383
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29188313 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 29188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 29844898 - 29844964
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  29844898 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtata 29844964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 33359774 - 33359704
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33359774 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 33359704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 46626321 - 46626395
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46626321 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 46626395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 1826863 - 1826797
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  1826863 ttaccaaattgccccttatagagccaaaatggtaaattcaagggacattacttttaatataagtata 1826797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 5426306 - 5426238
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||||    
T  5426306 aaactcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacatt 5426238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 19322341 - 19322415
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19322341 aaactcaaccaataagtagaataccaaattgccccttataggggcaaaatggtaaattcaagggacatttatttt 19322415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 10766256 - 10766193
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagt 116  Q
    ||||||||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  10766256 ttaccaaattgacccttataggggcaaaatggtaaatccataggacatttcttttaatataagt 10766193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 42678440 - 42678378
Alignment:
Q  57 caaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||    
T  42678440 caaattgccccttatagggataaaatggtaaattcatgggacatttctttttatataagtata 42678378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 38894825 - 38894776
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacattt 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38894825 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacattt 38894776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 28570795 - 28570747
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28570795 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacatt 28570747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 19400821 - 19400754
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    ||||||||||||||  ||  ||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  19400821 aaactcaaccaattaatagattaccgaattaccccttatatgggcaaaatggtaaattcaagggacat 19400754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 50557916 - 50557850
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||| |||  |||||||||||||||||||| || |||||||||||||||| |||||||    
T  50557916 aaactcaaccaattagtagattaccaaattgccccttata-ggacaaaatggtaaattcatgggacat 50557850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 10698131 - 10698189
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||| |||||||| |||||||||||||||||||| |  |||||||||||||    
T  10698131 taatttaccaaaatgccccttctaggggcaaaatggtaaatttattggacatttctttt 10698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 51971269 - 51971335
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    ||||||||||||||  ||  |||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  51971269 aaactcaaccaattaatagattaccaaattaccc-ttatagggacaaaatggtaacttcaagggacat 51971335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 43116118 - 43116052
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||  |||||||||||| | |||||||| |||||| | |||| |||| ||||||    
T  43116118 ttaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtata 43116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 8317 - 8397
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatagtataagtatatagat 135  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  8317 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatttcttttaatataagtata--ataagtatatagat 8397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 20592 - 20662
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20592 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtata 20662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 18682579 - 18682511
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18682579 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 18682511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 11955542 - 11955608
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  11955542 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtata 11955608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 22519279 - 22519194
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  22519279 aaactcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggaca-ttcttttaatagaagtata 22519194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 8393653 - 8393585
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8393653 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacatt 8393585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 19368938 - 19369013
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttta 108  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19368938 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacatttctttta 19369013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 22473714 - 22473648
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  22473714 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtata 22473648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 29530558 - 29530632
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29530558 aaactcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaaattcaagggacatttctttt 29530632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 26777847 - 26777912
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggac 98  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  26777847 aaactcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggac 26777912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 19895642 - 19895728
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||  ||  |||||||||||    
T  19895642 aaactcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtata 19895728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 35855274 - 35855220
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35855274 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttctttt 35855220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 55297340 - 55297414
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||    
T  55297340 aaactcaaccaattaataatttaccaaattaccctttataggggtaaaatggtaaattcgagggacatttctttt 55297414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 28981816 - 28981881
Alignment:
Q  35 actcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28981816 actcaaccaattagttgattaccaaattgccccttataggggcaaaatggtaaattcaagggacat 28981881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 4139344 - 4139412
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||    
T  4139344 aaactaaaccaatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacatt 4139412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 53800589 - 53800521
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||||||||| |||| |||||||    
T  53800589 aaactcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacatt 53800521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 8528120 - 8528174
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  8528120 ttaccaaattgccccttatagggacagaatggtaaattcaagggacatttctttt 8528174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 40831923 - 40831990
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||| |||  ||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  40831923 aaactcaaccaattagtagattaccgaattgtcccttataggagcaaaatggtaaattcaagggacat 40831990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 26102167 - 26102221
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  26102167 ttaccaaattacctcttataggggcaaaatggtaaattcaaaggacatttctttt 26102221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 33872279 - 33872209
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||| || ||||| ||||| ||||||||||||||||  ||||||||||||| |||| ||||||    
T  33872279 taatttaccaaaatggcccttctagggacaaaatggtaaattcatcggacatttctttttatattagtata 33872209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 11602187 - 11602228
Alignment:
Q  59 aattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  11602187 aattgccccttataggggcaaaatggtaaaatcaacggacat 11602228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 9563300 - 9563230
Alignment:
Q  49 taatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||| ||||| || || ||||||||||||||||| ||  ||||| |||||| |||| ||||||    
T  9563300 taatttaccaaaatgccctttctatgggcaaaatggtaaatttaatagacatctctttttatattagtata 9563230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 2847341 - 2847390
Alignment:
Q  43 aatttgtaatttaccaaattgccccttataggggcaaaatggtaaattca 92  Q
    |||| |||| ||||||||||||||||  |||||||||||||| |||||||    
T  2847341 aattagtaaattaccaaattgcccctcttaggggcaaaatggaaaattca 2847390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 15321260 - 15321297
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaatt 90  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  15321260 ttactaaattgccccttataggggcaaaattgtaaatt 15321297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 18378799 - 18378885
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||   |||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  18378799 aaactcaaccaataattaatttaccaaattgcccctaatagaggcaaaatgataaattcaaaggacatttcttttaatataagtata 18378885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 36776494 - 36776420
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36776494 aaactcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 36776420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 41973046 - 41972977
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattt 102  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41973046 aaactcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacattt 41972977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 24054004 - 24053930
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24054004 aaactcaaccaataagtagattaccaaattgccccttataggagcaaaatggtaaattcaagggacatttctttt 24053930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 7389288 - 7389185
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagta-tagtataagtatat 131  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||| |||||||   ||| |||| |||| |||||| |||||||    
T  7389288 aaactcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtattagtatat 7389189  T
Q  132 agat 135  Q
    ||||    
T  7389188 agat 7389185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 25346124 - 25346050
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25346124 aaactcaaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattcaatggacatttctttt 25346050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 25620711 - 25620778
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  25620711 aaactcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacat 25620778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 40616091 - 40616158
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||| |||  ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40616091 aaactcaaccaattagtagattaccaaattgcctcttataggagcaaaatggtaaattcaagggacat 40616158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 40587709 - 40587763
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  40587709 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttatttt 40587763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 41534245 - 41534319
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    ||||||||||||||  ||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||| ||||    
T  41534245 aaactcaaccaattaataatttatcaaattgtcccttataggagcaaaatggtaaattcatgggacatttatttt 41534319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 4466417 - 4466485
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||||||||||||||||||||  || ||| ||||||||||| |||| |||||||    
T  4466417 aaactcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacatt 4466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 8760771 - 8760723
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8760771 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 8760723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 25836282 - 25836330
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25836282 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 25836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 41152743 - 41152672
Alignment:
Q  50 aatttaccaaatt--gccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||||||||||||  | |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  41152743 aatttaccaaattaggaccctgatagggacaaaatggtaaattcaagggacatttctttttatataagtata 41152672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 9472241 - 9472168
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  9472241 aaactcaaccaataagtagattaccaaattgccc-ttatagaggcaaaatggtaatttcaagggacatttctttt 9472168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 42245729 - 42245803
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 107  Q
    |||||||||||||  |||  ||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  42245729 aaactcaaccaataagtagattatcaaattaccccttataggggcaaaatggtgaattcaagtgacatttctttt 42245803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 25616494 - 25616563
Alignment:
Q  33 aaactcaaccaattt-gtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||| |||||||||||||||||||||  || ||||||||||||||| |||| |||||||    
T  25616494 aaactcaaccaattttgtaatttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacatt 25616563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 1942859 - 1942811
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  1942859 ttaccaaattgccccttatagaggcaaaatggtaaattcatgggacatt 1942811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 8162792 - 8162840
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  8162792 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacatt 8162840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 44389002 - 44389069
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    ||||||||||||||  ||  |||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  44389002 aaactcaaccaattaatagattaccaaattaccccttataagggaaaaatggtaaattcaagggacat 44389069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 45435060 - 45435013
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacat 100  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  45435060 ttaccaaattgccccttataagggcaaaatggtaaattcaagtgacat 45435013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 32844219 - 32844171
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  32844219 ttaccaaattgccccttatcggggcaaaatggtaaatttatgggacatt 32844171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 42899975 - 42900013
Alignment:
Q  252 cgaatctcgattctttcagcgttcaattcaacccaatct 290  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  42899975 cgaatcttgattctttcagcgttcaattcaacccaatct 42900013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 19243315 - 19243239
Alignment:
Q  43 aatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||| |||| |||||||||||||||| | |||||||||| |||||| ||||  |||||  ||||| |||| ||||||    
T  19243315 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtata 19243239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 19316499 - 19316423
Alignment:
Q  43 aatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    |||| |||| |||||||||||||||| | |||||||||| |||||| ||||  |||||  ||||| |||| ||||||    
T  19316499 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtata 19316423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 5888 - 5956
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5888 aaactcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 5956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 62152 - 62084
Alignment:
Q  33 aaactcaaccaatttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  62152 aaactcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacatt 62084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 11846 - 11777
Alignment:
Q  50 aatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtata 119  Q
    ||||||||||||||||||| |||  |||||||||||||||||||  ||||||||||||||||||||||||    
T  11846 aatttaccaaattgcccctaataaaggcaaaatggtaaattcaaatgacatttcttttaatataagtata 11777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 9639 - 9591
Alignment:
Q  53 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 101  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9639 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacatt 9591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 96 times since January 2019
Visitors: 6125