View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0877_low_1 (Length: 632)

Name: NF0877_low_1
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0877_low_1
NF0877_low_1
[»] chr3 (1 HSPs)
chr3 (1-625)||(42365539-42366154)


Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 42366154 - 42365539
Alignment:
Q  1 ttcagcgaaagctgagaaggcttaaggacaaagaaattgatcatggtcgccacatgaagggatccaataggttgaaatttagagaggcagtattgccatt 100  Q
    ||||| |||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42366154 ttcagagaaagctgagaaagattaaggaaaaagaaactgatcatggtcgccacatgaagggatccaataggttgaaatttagagaggcagtattgccatt 42366055  T
Q  101 acccactgaggatgaggaggatgaaactgaaatctcccctcagaaggaggaagaagaagaacttattgaagaggttggtaccttaattgttgatattaat 200  Q
    ||||||         |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42366054 acccac---------ggaggatgaaactgaaatctccccacagaaggaggaagaagaagaacttattgaagaggttggtaccttaattgttgatattaat 42365964  T
Q  201 cattatgtagctagaagtatcatattaggctgtgtcattctagaaatataactgaaaattatcctgcaaactgattagaaaaacttcaatttcacgtttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42365963 cattatgtagctagaagtatcatattaggctgtgtcattctagaaatataattgaaaattatcctccaaactgattagaaaaacttcaatttcacgtttg 42365864  T
Q  301 gaagtagatttgcagtttgctcttacactatttatgttgattgatgatatatcattacttatcaatagattctgctgttgttttgttatttattgtttat 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  42365863 gaagtagatttgcagtttgctcttacactgtttatgttgattgatgatatatcattacttatcaagagatgctgctgctgttttgttatttattgtttat 42365764  T
Q  401 tttccttacattgcacttactctagttgtgaggctgttttacaggttgttcggacaaaatacttcgacatgcctcctttaactgtgtttgaagcaattga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42365763 tttccttacattgcacttactctagttgtgaggctgttttacaggttgttcggacaaaatacttcgacatgcctcctttaactgtgtttgaagcaattga 42365664  T
Q  501 ccagttggaaatggttgctcatgacttctatgcttttcgaaatgaagaatctggtcagtaaatactactgttttagctatctttggtttgaccatgtttc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42365663 ccagttggaaatggttgctcatgacttctatgcttttcgaaatgaagaatctggtcagtaaatactactgttttagctatctttggtttgaccatgtttc 42365564  T
Q  601 tcactacattttattgtctctgctc 625  Q
    |||||||||||||||||||| ||||    
T  42365563 tcactacattttattgtctcggctc 42365539  T

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