View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_low_10 (Length: 301)
Name: NF0877_low_10
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 36806941 - 36807195
Alignment:
| Q |
16 |
attacaattaactaaggtgtttaaaagtcgtatacaagtaactaaggtgtttaaaagtcgtggagaatttaagcctcttagtttgatctttttggatcat |
115 |
Q |
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| T |
36806941 |
attacaattaactaaggtgtttaaaagtcgtatacaagtaactaaggtgtttaaaagtcgtggagaatttaagcctcttagtttgatctttttggatcac |
36807040 |
T |
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| Q |
116 |
gagccttctcacgcac----nnnnnnnnnnnncacaaactag--tatgtttctacactccaattgagccaagatattggatttggggaaatcaattcgct |
209 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36807041 |
gagccttctcacgcacaaaaaaaaaaaaaaaatacaaactagtatatgtttctacacttcaattgagccaagatattggatttggggaaatcaattcgct |
36807140 |
T |
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| Q |
210 |
cttaaatcaacaaaagaggtcatttaactataagaagttgattgtgtaatctgga |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36807141 |
tttaaatcaacaaaagaggtcatttaactataagaagttgattgtgtaatctgga |
36807195 |
T |
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