View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_low_15 (Length: 245)
Name: NF0877_low_15
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4488303 - 4488515
Alignment:
| Q |
1 |
acccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttct |
100 |
Q |
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| T |
4488303 |
acccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttct |
4488402 |
T |
|
| Q |
101 |
acatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaatatcttacctttctctgc |
200 |
Q |
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| T |
4488403 |
acatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaatatcttacctttctctgc |
4488502 |
T |
|
| Q |
201 |
tcacacattttct |
213 |
Q |
| |
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||||||||||||| |
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| T |
4488503 |
tcacacattttct |
4488515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 1409630 - 1409834
Alignment:
| Q |
6 |
ttgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatg |
105 |
Q |
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| T |
1409630 |
ttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctgattcaatcactacaacttctacatg |
1409729 |
T |
|
| Q |
106 |
cacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaatatcttacctttctctgctcaca |
205 |
Q |
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| T |
1409730 |
cacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaacaatatcttacctttctctgctcaca |
1409829 |
T |
|
| Q |
206 |
cattt |
210 |
Q |
| |
|
||||| |
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| T |
1409830 |
cattt |
1409834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
| Q |
46 |
tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct |
110 |
Q |
| |
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| T |
1402810 |
tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct |
1402874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
| Q |
7 |
tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
106 |
Q |
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| T |
40682322 |
tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc |
40682223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 22621884 - 22621917
Alignment:
| Q |
177 |
gaacaatatcttacctttctctgctcacacattt |
210 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
22621884 |
gaacaatatcttacctttctatgctcacacattt |
22621917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
| Q |
33 |
tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
106 |
Q |
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|||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| || ||||||||| |
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| T |
11955361 |
tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc |
11955434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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