View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0877_low_2 (Length: 492)
Name: NF0877_low_2
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 2083582 - 2083977
Alignment:
| Q |
1 |
aaactaaagtaacataaacatgaaagttggatcacttgaaatccattccactacgacaaaagatacaaacttatcatatcacaataattattggataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083582 |
aaactaaagtaacataaacatgaaagttggatcacttgaaatccattccactacgacaaaagatacaaacttatcatatcacaataattattggataatt |
2083681 |
T |
|
| Q |
101 |
tagattcattgatgggataaatacaatttacaatggtaagaagaaaaatgatgcaaaaggagtttccacttagcaactatgagacagatgagaacatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083682 |
tagattcattgatgggataaatacaatttacaatggtaagaagaaaaatgatgcaaaaggagtttccacttagcaactatgagacagatgagaacatttc |
2083781 |
T |
|
| Q |
201 |
catttagtgtgatgcagtatcatctaaagaatcatctagatcatattcaacagagaaattacaaaactccctagcaaaatcagcaccttcaattaactca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083782 |
catttagtgtgatgcagtatcatctaaagaatcatctagatcatattcaacagagaaattacaaaactccctagcaaaatcagcaccttcaattaactca |
2083881 |
T |
|
| Q |
301 |
atttcatcatccctcataaactccctcagtttctccttaaaaatccccaactcttcctccaaaaaggtcttctgagactcgagctgcacaacatcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2083882 |
atttcatcatccctcataaactccctcagtttctccttaaaaatccccaactcttcctccaaaaaggtcttctgagactcgagctgcacaacatcc |
2083977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1384 times since January 2019
Visitors: 6140