View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_low_4 (Length: 453)
Name: NF0877_low_4
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 97 - 417
Target Start/End: Complemental strand, 2628202 - 2627879
Alignment:
| Q |
97 |
gtcgggtgctgattggtggctgtgttttggtctttgccttgattgtctgtctgctgttatgcctttgcaattgagtccctcaggatgccaggtctgtagt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2628202 |
gtcgggtgctgattggtggctgtgttttggtctttgccttgattgtctgtctgttgttacgcctttgcaattgagtccctcaggatgccaggtctgtagt |
2628103 |
T |
|
| Q |
197 |
ggtttgtgtttaggtgatttgcgttttcttttttctaagagccagctgttaattctgtgaccctctaa---ggtgttttggggttgctgtatcagcagtt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2628102 |
ggtttgtgtttaggtgatttgcgttttcttttttctaagagccagctgttaattctgtgaccctctaaggtggtgttttggggttgctgtatcagcagtt |
2628003 |
T |
|
| Q |
294 |
ttagctacaggggcagttgtttttggtagttcttagttgtttttctgctattcagaattttatttgtatcttcaatctcaagcgcagtttgtgctcaagt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628002 |
ttagctacaggggcagttgtttttggtagttcttagttgtttttctgctattcagaattttatttgtatcttcaatctcaagcgcagtttgtgctcaagt |
2627903 |
T |
|
| Q |
394 |
gttttcaataaaagtttagctatt |
417 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2627902 |
gttttcaataaaagtttagctatt |
2627879 |
T |
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