View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_low_5 (Length: 415)
Name: NF0877_low_5
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 14467816 - 14467499
Alignment:
| Q |
6 |
ctccaacaatatagattgaatccactgtgaaatacatattcacatgtgtcaaaattgaacctgttaccaaacgggaaacttgtaccatatagagatcaaa |
105 |
Q |
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| T |
14467816 |
ctccaacattatagattgaatcaactgtgaaata-atattcacatatgtcaagttccaacctgttaccaaacgggaaacttggaccatatagagatcaaa |
14467718 |
T |
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| Q |
106 |
atcttcttttctagtattttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaattt |
205 |
Q |
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| T |
14467717 |
atcttcttttctagtagtttggcttagatttattgttgtagtgaatgttcacttacaactgtgttatttgctaaaattaaattcaatcacattggaattt |
14467618 |
T |
|
| Q |
206 |
gtaggtgtgtaagaatttttggggaggaaaattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagta |
305 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
14467617 |
gtaggtgtgtaagaatttttggggaggaaaattgtcgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcatttgtcaatgcagta |
14467518 |
T |
|
| Q |
306 |
ggaattggtacacaaaatg |
324 |
Q |
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| T |
14467517 |
ggaattggtgcacaaaatg |
14467499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 135 - 324
Target Start/End: Complemental strand, 14458805 - 14458616
Alignment:
| Q |
135 |
ttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaatttttggggaggaa |
234 |
Q |
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| T |
14458805 |
ttattgttgtaatgaatgttcacttacaattgtgttatttgctaaaactaaattcaatcacattggaatttgtaggtgtgtaagaatttttggggaggaa |
14458706 |
T |
|
| Q |
235 |
aattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaaatg |
324 |
Q |
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| T |
14458705 |
aattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaaatg |
14458616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14458866 - 14458826
Alignment:
| Q |
111 |
cttttctagtattttggcttagatttattgttgtaatgaat |
151 |
Q |
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| T |
14458866 |
cttttctagtatgttggcttagatttattgttgtaatgaat |
14458826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 12069492 - 12069290
Alignment:
| Q |
122 |
ttttggcttagatttattgttgtaatgaatgttcacttacacttgtgttatttgctaaaattaaattcaatcacattggaatttgtaggtgtgtaagaat |
221 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
12069492 |
ttttggcttagatttattgttgtaatgaatattcactttcacttgtgttttttgctaaaattaaattcaatcgcattggaatttgtaggtgtgtcagaat |
12069393 |
T |
|
| Q |
222 |
ttttggggaggaaaattgccgctcgaagactacgtttttgctttgaaggatgtagttggagttgaagcttttgtcgatgcagtaggaattggtacacaaa |
321 |
Q |
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|||||||||||||||||| || | ||| || ||||||||||||||||| || ||| |||||||||||| || ||||||||||||||||||||| ||| | |
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| T |
12069392 |
ttttggggaggaaaattgtcgttagaaaacaacgtttttgctttgaagagtgaagtaggagttgaagctcttatcgatgcagtaggaattggtaaacaga |
12069293 |
T |
|
| Q |
322 |
atg |
324 |
Q |
| |
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||| |
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|
| T |
12069292 |
atg |
12069290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 12069536 - 12069487
Alignment:
| Q |
178 |
aaaattaaattcaatcacattggaatttgtaggtgtgtaagaatttttgg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12069536 |
aaaattaaattcaatcacattggaatttgtaggtgtgtcagaatttttgg |
12069487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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