View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0877_low_6 (Length: 354)
Name: NF0877_low_6
Description: NF0877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0877_low_6 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 13122 - 12840
Alignment:
| Q |
13 |
cagacacaagccttgtcctataaagaagttagtcacccatcccacaaaatcttaaccactccatctaagaaccaatcaacactagcatcaaccccaactc |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13122 |
cagacacaagccttgtcccataaagaagttagtcacccatcccacaaaatcttaaccactccatctaagaaccaatcaacactagcatcaaccccaactc |
13023 |
T |
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| Q |
113 |
ctacaagagagacatcattccatcctggaaatgcagtagacaaactaccacatctccctcccatggtggacaatacataattaacatcatacctagtaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022 |
ctacaagagagacatcattccatcctggaaatgcagtagacaaactaccacatctccctcccatggtggacaatacataattaacatcatacctagtaga |
12923 |
T |
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| Q |
213 |
gataatatctcttgaaataaatattcctctagtagggagtctccgccgaacattcccatcatagcttgattcaccatcctatg |
295 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12922 |
gataatatctcttgaaagaaatattcctctagtaaggagtctccgccgaacattcccatcatagcttgattcaccatcctatg |
12840 |
T |
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