View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0878_high_1 (Length: 832)
Name: NF0878_high_1
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 29 - 825
Target Start/End: Complemental strand, 30708884 - 30708087
Alignment:
| Q |
29 |
aatcctcttcgacaaacagttgttttgtcacagtaaaatctttgttcttagattaacctaaaggtttacagaatggttttagccgttggagttgttgcgg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708884 |
aatcctcttcgacaaacagttgttttgtcac-gtaaaatcttagttcttagattaacctaaaggtttacagaatggttttagccgttggagttgttgcgg |
30708786 |
T |
|
| Q |
129 |
atggagaggtcaataggatccaatttatggagggatgaggtcatatagaattcaatttcttgaactatgatcact--ctgtttttaagaattaccggggt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30708785 |
atggagaggtcaataggatccaatttatggagggatgaggtcatatagaattcaatttcttgaactatgatcactttctgtttttaagaattactggggt |
30708686 |
T |
|
| Q |
227 |
tgttcaattaaaatgggtatgtgttattgttgattcattcattaacaatttaatgggtttgtgcagatcaagcagatttgctagattgcagagccttcag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708685 |
tgttcaattaaaatgggtatgtgttattgttgattcattcattaacaatttaatgggtttgtgcagatcaagcagatttgctagattgcagagccttcag |
30708586 |
T |
|
| Q |
327 |
ccgacaattgctggcaagaatttgtacattcgtttccgttgcagtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttg |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708585 |
ccgacaattgctggcaagaatttgtacattcgtttccgttgtagtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttg |
30708486 |
T |
|
| Q |
427 |
attttcttcagagtgactttcctgacatggatgtcattggaatctcaggtaaatcatgagcttgtttgtataattttttcttcataccattaatcctaaa |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708485 |
attttcttcagagtgactttcctgacatggatgtcattggaatctcaggtaaatcatgagcttgtttgtataattttttcttcataccattaatcctaaa |
30708386 |
T |
|
| Q |
527 |
actgttccttgttatggttgaattgaaaatagttgctaatgttttcatccacactgttggtttggttatggcaggaaatttctgttccgacaagaaagcg |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708385 |
actgttccttgttatggttgaattgaaaatagttgctaatgttttcatgcacactgttggtttggttatggcaggaaatttctgttccgacaagaaagcg |
30708286 |
T |
|
| Q |
627 |
gcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtgaagaaagtgttgaagactagtgtggagg |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708285 |
gcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtgaagaaagtgttgaagactagtgtggagg |
30708186 |
T |
|
| Q |
727 |
cactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgctcatgctagcaatattgtctctgctg |
825 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30708185 |
cactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgctcatgctagcaacattgtctctgctg |
30708087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 600 - 817
Target Start/End: Original strand, 39676833 - 39677050
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || || |||||||||||| | || || || ||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
39676833 |
ggaaatttttgttcggacaagaaagctgcggcggtgaattggattgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtga |
39676932 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||||||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |
|
|
| T |
39676933 |
agaaagtgttgaagactagcgtggagtctttggttgagcttaacatgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgc |
39677032 |
T |
|
| Q |
800 |
tcatgctagcaatattgt |
817 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
39677033 |
acatgctagtaatattgt |
39677050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 599 - 824
Target Start/End: Original strand, 10047037 - 10047262
Alignment:
| Q |
599 |
aggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtg |
698 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||| || || |||||||||||| | || || || ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10047037 |
aggaaatttttgttcggataagaaagccgcggcggtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtg |
10047136 |
T |
|
| Q |
699 |
aagaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatg |
798 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||| | || || || ||||| |||||| | ||||||||||||||||| ||||||| |
|
|
| T |
10047137 |
aagaaagtgttgaagattagtgtggagtctttggttgagcttaacatgttaaaaaatcttactggttcagccatggctggtgctcttggtggattcaatg |
10047236 |
T |
|
| Q |
799 |
ctcatgctagcaatattgtctctgct |
824 |
Q |
| |
|
| |||||||| |||||||| |||||| |
|
|
| T |
10047237 |
cacatgctagtaatattgtttctgct |
10047262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 600 - 823
Target Start/End: Original strand, 10867290 - 10867513
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || || |||||||||||| | || || || ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10867290 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtga |
10867389 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| || ||||| || || |||||| | |||||||||||||| || || ||||| |
|
|
| T |
10867390 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgc |
10867489 |
T |
|
| Q |
800 |
tcatgctagcaatattgtctctgc |
823 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10867490 |
acatgctagtaatattgtttctgc |
10867513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 600 - 823
Target Start/End: Complemental strand, 10873022 - 10872799
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| | || || || ||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
10873022 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
10872923 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| || ||||| || || |||||| | |||||||||||||| || || ||||| |
|
|
| T |
10872922 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgc |
10872823 |
T |
|
| Q |
800 |
tcatgctagcaatattgtctctgc |
823 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10872822 |
acatgctagtaatattgtttctgc |
10872799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 600 - 823
Target Start/End: Complemental strand, 10878093 - 10877870
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| | || || || ||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
10878093 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
10877994 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| || ||||| || || |||||| | |||||||||||||| || || ||||| |
|
|
| T |
10877993 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgc |
10877894 |
T |
|
| Q |
800 |
tcatgctagcaatattgtctctgc |
823 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10877893 |
acatgctagtaatattgtttctgc |
10877870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 600 - 823
Target Start/End: Complemental strand, 10883164 - 10882941
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| | || || || ||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
10883164 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
10883065 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| || ||||| || || |||||| | |||||||||||||| || || ||||| |
|
|
| T |
10883064 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgc |
10882965 |
T |
|
| Q |
800 |
tcatgctagcaatattgtctctgc |
823 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10882964 |
acatgctagtaatattgtttctgc |
10882941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 600 - 823
Target Start/End: Complemental strand, 10887079 - 10886856
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
699 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || || |||||||||||| | || || || ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10887079 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtga |
10886980 |
T |
|
| Q |
700 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactggatcagcccttgctggtgctcttggtgggttcaatgc |
799 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| || ||||| || || |||||| | |||||||| ||||| || || || || |
|
|
| T |
10886979 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgctaaaaaaccttaccggttcagccatggctggtgcacttggcggctttaacgc |
10886880 |
T |
|
| Q |
800 |
tcatgctagcaatattgtctctgc |
823 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
10886879 |
acatgctagtaatattgtttctgc |
10886856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 39676734 - 39676825
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| | ||| |||||||| |||||||| ||||| |
|
|
| T |
39676734 |
ggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttcaaactgattttcctgatatggatgttattgg |
39676825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 10046836 - 10046938
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattggaatctcag |
474 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||||||||| || || |||||||| |||||||| ||||| || |||| |
|
|
| T |
10046836 |
ggtgatgcaatgggaatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttcaaagcgattttcctgatatggatgttattggtatatcag |
10046935 |
T |
|
| Q |
475 |
gta |
477 |
Q |
| |
|
||| |
|
|
| T |
10046936 |
gta |
10046938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 478
Target Start/End: Original strand, 37949450 - 37949559
Alignment:
| Q |
369 |
agtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattggaa |
468 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| || || || || |||||||| |||| | ||| || |||||||||||||| ||||| | |
|
|
| T |
37949450 |
agtacgggtgatgccatggggatgaacatggtctccaaaggggtgcagaacgttcttgatttccttcgaaatgatttccctgacatggatgttattggca |
37949549 |
T |
|
| Q |
469 |
tctcaggtaa |
478 |
Q |
| |
|
| |||||||| |
|
|
| T |
37949550 |
tatcaggtaa |
37949559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 10867191 - 10867282
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
10867191 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10867282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10873121 - 10873030
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
10873121 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10873030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10878192 - 10878101
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
10878192 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10878101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10883263 - 10883172
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
10883263 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10883172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10887178 - 10887087
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
10887178 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10887087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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