View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_high_21 (Length: 266)
Name: NF0878_high_21
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 12188747 - 12188979
Alignment:
| Q |
29 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgactccaatcaagtcagattcagtcctaaaatata |
128 |
Q |
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| T |
12188747 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgtctccaatcaagtcagattcagtcctaaaatata |
12188846 |
T |
|
| Q |
129 |
agaatacgataaatgttagaatataaaaggattctataaattagttaataattagaggatacaatataattcaagaaaatttgtatccattttataacca |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12188847 |
agaatacgataaatgttagagtataaaaggattctataaattagttaataattagaggatacaatataattcaagaaaatttgtatccattttataacca |
12188946 |
T |
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| Q |
229 |
agaaagaaatagcaaatagaataataaaaatta |
261 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
12188947 |
agaaagaaatagcaagtagaataataaaaatta |
12188979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 12433175 - 12433407
Alignment:
| Q |
29 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgactccaatcaagtcagattcagtcctaaaatata |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12433175 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgtctccaatcaagtcagattcagtcctaaaatata |
12433274 |
T |
|
| Q |
129 |
agaatacgataaatgttagaatataaaaggattctataaattagttaataattagaggatacaatataattcaagaaaatttgtatccattttataacca |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12433275 |
agaatacgataaatgttagagtataaaaggattctataaattagttaataattagaggatacaatataattcaagaaaatttgtatccattttataacca |
12433374 |
T |
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| Q |
229 |
agaaagaaatagcaaatagaataataaaaatta |
261 |
Q |
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| T |
12433375 |
agaaagaaatagcaagtagaataataaaaatta |
12433407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 12177426 - 12177541
Alignment:
| Q |
29 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgactccaatcaagtcagattcagtcctaaaatata |
128 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12177426 |
atgaacaagcatctaagttcatttgtatacttttgattcaatttttggaggactgctttgatgatgtctccaatcaagtcagcttcagtcctaaaatata |
12177525 |
T |
|
| Q |
129 |
agaatac-gataaatg |
143 |
Q |
| |
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||||||| |||||||| |
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| T |
12177526 |
agaatacagataaatg |
12177541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 12421854 - 12421969
Alignment:
| Q |
29 |
atgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgctttgatgatgactccaatcaagtcagattcagtcctaaaatata |
128 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12421854 |
atgaacaagcatctaagttcatttgtatacttttgattcaatttttggaggactgctttgatgatgtctccaatcaagtcagcttcagtcctaaaatata |
12421953 |
T |
|
| Q |
129 |
agaatac-gataaatg |
143 |
Q |
| |
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||||||| |||||||| |
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| T |
12421954 |
agaatacagataaatg |
12421969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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