View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_high_24 (Length: 263)
Name: NF0878_high_24
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 35817310 - 35817491
Alignment:
| Q |
53 |
ttacaactatttggcttaccttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacactcacatattggaaatg |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35817310 |
ttacaactatttggcttaccttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacactcacatattggaaatg |
35817409 |
T |
|
| Q |
153 |
acctagaagaaaacattgataagaaaaagatcaacatagtttttctgcattatttgaatctgcagtcatcaacacaagtcat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35817410 |
acctagaagaaaacattgataagaaaaagatcaacatagtttttctgcattatttgaatctgcagtcatcaacacaagtcat |
35817491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 47704189 - 47704058
Alignment:
| Q |
65 |
ggcttaccttgaatcattatccaacaagaaagaattactaattgcattatttgaatcttcagtcatcaacactcacatattggaaatgacctagaagaaa |
164 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||| | |||| |
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| T |
47704189 |
ggcttaccttgaatcatcatccaacaggaaagaattactaactgcattatttgaatcttcagtcatcagcactcgcatattggatattacctacatgaaa |
47704090 |
T |
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| Q |
165 |
acattgataagaaaaagatcaacatagttttt |
196 |
Q |
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| T |
47704089 |
acatttatacggcaaagctcaacatagttttt |
47704058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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