View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0878_high_27 (Length: 252)

Name: NF0878_high_27
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0878_high_27
NF0878_high_27
[»] chr5 (3 HSPs)
chr5 (1-105)||(4292636-4292740)
chr5 (124-234)||(4292760-4292868)
chr5 (178-238)||(4985599-4985659)
[»] chr3 (5 HSPs)
chr3 (146-238)||(46344412-46344504)
chr3 (148-238)||(41877688-41877778)
chr3 (178-238)||(25142658-25142718)
chr3 (151-238)||(40478268-40478355)
chr3 (148-238)||(11327108-11327198)
[»] chr8 (6 HSPs)
chr8 (147-235)||(38504169-38504257)
chr8 (147-234)||(30927916-30928003)
chr8 (143-238)||(29509261-29509356)
chr8 (144-238)||(41273511-41273605)
chr8 (145-238)||(28156200-28156293)
chr8 (145-238)||(43587638-43587731)
[»] scaffold0618 (1 HSPs)
scaffold0618 (180-238)||(3392-3450)
[»] scaffold0019 (1 HSPs)
scaffold0019 (147-238)||(72365-72456)
[»] chr1 (5 HSPs)
chr1 (148-238)||(37669398-37669488)
chr1 (147-238)||(7371929-7372020)
chr1 (143-238)||(43196070-43196165)
chr1 (178-238)||(29632464-29632524)
chr1 (178-234)||(50145786-50145842)
[»] chr7 (6 HSPs)
chr7 (146-238)||(30864398-30864490)
chr7 (178-238)||(16645660-16645720)
chr7 (178-238)||(17620021-17620081)
chr7 (148-238)||(33050183-33050273)
chr7 (194-238)||(33881686-33881730)
chr7 (178-238)||(40507159-40507219)
[»] chr6 (3 HSPs)
chr6 (178-225)||(24881758-24881805)
chr6 (147-238)||(15364657-15364749)
chr6 (138-170)||(19789125-19789157)
[»] chr2 (6 HSPs)
chr2 (146-238)||(34144532-34144624)
chr2 (147-238)||(44484637-44484728)
chr2 (147-238)||(11442671-11442762)
chr2 (189-238)||(12175309-12175358)
chr2 (180-228)||(30192342-30192390)
chr2 (183-235)||(45372511-45372563)
[»] scaffold0576 (1 HSPs)
scaffold0576 (147-238)||(9428-9520)
[»] chr4 (5 HSPs)
chr4 (146-238)||(35037607-35037699)
chr4 (146-233)||(54165147-54165234)
chr4 (148-238)||(4550334-4550424)
chr4 (148-234)||(51224823-51224909)
chr4 (145-238)||(24235317-24235410)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4292636 - 4292740
Alignment:
Q  1 aaaaattctcaaatatttaggggctttgtaaaaaacagaagtgtaaggacctcatagttttagtgattaacacaccataaacgtgacgaaatggaggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4292636 aaaaattctcaaatatttaggggctttgtaaaaaacagaagtgtaaggacctcataattttagtgattaacacaccataaacgtgacgaaatggaggatc 4292735  T
Q  101 atatc 105  Q
    |||||    
T  4292736 atatc 4292740  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 4292760 - 4292868
Alignment:
Q  124 gacaaaggaggatcatatctttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttatta 223  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||       |||||||||| |||| ||||||||| || || | |||||| | |||    
T  4292760 gacaaaggaggatcatatcttta--agaaatgatatatgtagaaccatttttttacaatttttggacaactttctctctcatgtttacatgatgctctta 4292857  T
Q  224 tcctccctctt 234  Q
    ||||| |||||    
T  4292858 tcctctctctt 4292868  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 4985599 - 4985659
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||| |||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||||    
T  4985599 acaactttttaacaattttctctctcatactcatattatgtttttattctctctcttcctt 4985659  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 46344412 - 46344504
Alignment:
Q  146 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||||| |||||||| |       |||||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||    
T  46344412 aagagaaatgatatttgtacaactaatttgttacaatttttgtacaattttctctctcatattcatatgatggtcttatcctctctcttcctt 46344504  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 41877688 - 41877778
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  41877688 gagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatgttattatcctctctcttcctt 41877778  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 25142658 - 25142718
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||| |||| ||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||    
T  25142658 acaactttttaacaattttatctcttatactcacatgatgttattatcctctctcttcctt 25142718  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 40478355 - 40478268
Alignment:
Q  151 aaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||| ||||||||||       |||| ||||  |||| ||||| ||| ||||||| ||||||||||||||||| |||||||||    
T  40478355 aaatgatatttgtacaaccattttgctacaactttttgacaactttctatctcatattcacatgatgttattatcctctctcttcctt 40478268  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 11327108 - 11327198
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 11327198  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 38504169 - 38504257
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttc 235  Q
    ||||||||||||| ||||||||||       |||||||||  |||| ||||||||||||| |||||||||||| |||||||| ||||||    
T  38504169 agagaaatgatatttgtacaaccattttgctacaattttttgacaactttctctctaatactcatatgatgttgttatcctcactcttc 38504257  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 30928003 - 30927916
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 234  Q
    ||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| |||||||||| | |||||||| |||||    
T  30928003 agagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactcatatgatggtcttatcctctctctt 30927916  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 29509261 - 29509356
Alignment:
Q  143 tttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||| |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||| ||||||||||| |||||||||    
T  29509261 tttatgagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatattattatcctctctcttcctt 29509356  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 41273511 - 41273605
Alignment:
Q  144 ttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||||||| ||||||| ||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  41273511 ttaagagaaatgatatttgtacaaacaatttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 41273605  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 28156200 - 28156293
Alignment:
Q  145 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| | | || ||||| |||| ||| |||||||||    
T  28156200 taagagaaatgatatttgtacaaccattttggtacaatttttgtacaactttctctctcatacttacattatgtttttattctctctcttcctt 28156293  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 43587638 - 43587731
Alignment:
Q  145 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||||| |||| |||||       |||| ||||  |||||||||||||| ||| ||| |||||||| |||| ||| |||||||||    
T  43587638 taagagaaatgatatttgtataaccattttgctacaactttttgacaattttctctctcatactcacatgatgttgttattctctctcttcctt 43587731  T

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Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 3392 - 3450
Alignment:
Q  180 aatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||    
T  3392 aatttttgtacaattttctctctcatattcatatgatggtcttatcctctctcttcctt 3450  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 72365 - 72456
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||| ||||||||||       |||| |||||||||||||||||||| ||||||| ||||  || |||||||| |||||||||    
T  72365 agagaaatgatatttgtacaaccattttgcaacaacttttgaacaattttctctctcatattcacatgacatttttatcctctctcttcctt 72456  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 37669398 - 37669488
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||| ||||||| ||       |||| |||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  37669398 gagaaatgatatttgtacaatcattttgatacaactttttaacaaatttctctctcatattcacatgatgttattatcctctctcttcctt 37669488  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 7372020 - 7371929
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||| |||||||| |       |||||||||| |||||||||||||| ||| | |||||||| | |||||||| ||| |||||    
T  7372020 agagaaatgatatttgtacaactaatttatgacaatttttgtacaattttctctctcatacttatatgatggtcttatcctctctcctcctt 7371929  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 43196165 - 43196070
Alignment:
Q  143 tttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||||||| |||||| |||       |||| ||||  |||||||||||||| ||| ||| |||||||| |||| ||| |||||||||    
T  43196165 tttaagagaaatgatatttgtacatccattttgctacaactttttgacaattttctctctcatactcacatgatgttgttattctctctcttcctt 43196070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 29632464 - 29632524
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||  |||||||||||||| | |||||||| ||||| |||| ||| |||||||||    
T  29632464 acaattttttgacaattttctctctcacattcatattatgtttttattctctctcttcctt 29632524  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 50145842 - 50145786
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 234  Q
    |||| ||||||| |||||||||||| ||| |||||||||||| ||||| || |||||    
T  50145842 acaacttttgaataattttctctctcatactcatatgatgttgttatcatctctctt 50145786  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 30864490 - 30864398
Alignment:
Q  146 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| |||||||||| | |||||||| |||||||||    
T  30864490 aagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcatatgatggtcttatcctctctcttcctt 30864398  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 16645720 - 16645660
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  16645720 acaattttttgacaactttctctctcatagtcacatgatgttattatcctctctcttcctt 16645660  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 17620081 - 17620021
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  17620081 acaattttttgacaactttctctctcatagtcacatgatgttattatcctctctcttcctt 17620021  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 33050183 - 33050273
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  33050183 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 33050273  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 33881730 - 33881686
Alignment:
Q  194 tttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  33881730 tttctctctcatactcacatgatgttattatcctctctcttcctt 33881686  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 40507159 - 40507219
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||  |||||||||||||| ||| |||||| ||||| |||| ||| |||||||||    
T  40507159 acaattttttgacaattttctctcttatactcatattatgtttttattctctctcttcctt 40507219  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 24881805 - 24881758
Alignment:
Q  178 acaatttttgaacaattttctctctaatattcatatgatgttattatc 225  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  24881805 acaacttttgaacaattttctctcttatattcacatgatgttattatc 24881758  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 15364657 - 15364749
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatga-tgttattatcctccctcttcctt 238  Q
    ||||||||||||| ||||||||||       ||||||||| ||||| ||| ||||| ||| ||| |||| ||||||||||||| |||||||||    
T  15364657 agagaaatgatatttgtacaaccattttgctacaattttttaacaactttgtctctcatactcacatgattgttattatcctctctcttcctt 15364749  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 19789157 - 19789125
Alignment:
Q  138 atatctttaagagaaatgatatatgtacaacca 170  Q
    |||||||||||||||||||||| ||||||||||    
T  19789157 atatctttaagagaaatgatatttgtacaacca 19789125  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 34144624 - 34144532
Alignment:
Q  146 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  34144624 aagagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 34144532  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 44484728 - 44484637
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| ||| |||||||| ||||| || |||||||||    
T  44484728 agagaaatgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcatactcacatgatgttcttatcatctctcttcctt 44484637  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 11442671 - 11442762
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||| ||||||||||       |||||||||  |||| ||||||||| ||| |||||| || || |||| |||||||||||||    
T  11442671 agagaaatgatatttgtacaaccatttcattacaattttttgacaactttctctctcatactcatattatattcttattctccctcttcctt 11442762  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 12175358 - 12175309
Alignment:
Q  189 acaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||| ||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  12175358 acaactttatctctcatactcatatgatgttattatcctctctcttcctt 12175309  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 30192390 - 30192342
Alignment:
Q  180 aatttttgaacaattttctctctaatattcatatgatgttattatcctc 228  Q
    ||||||||||||||||||||||| ||| ||| ||||| || ||||||||    
T  30192390 aatttttgaacaattttctctctcatactcacatgatatttttatcctc 30192342  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 45372511 - 45372563
Alignment:
Q  183 ttttgaacaattttctctctaatattcatatgatgttattatcctccctcttc 235  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||| || ||||||    
T  45372511 tttttaacaattttctctcttatactcacatgatgttattatcatctctcttc 45372563  T

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Target: scaffold0576 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 9428 - 9520
Alignment:
Q  147 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatga-tgttattatcctccctcttcctt 238  Q
    ||||||||||||| ||||||||||       ||||||||| ||||| ||| ||||| ||| ||| |||| ||||||||||||| |||||||||    
T  9428 agagaaatgatatttgtacaaccattttgctacaattttttaacaactttgtctctcatactcacatgattgttattatcctctctcttcctt 9520  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 35037607 - 35037699
Alignment:
Q  146 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||||| ||||||||||       |||| ||||| ||||| |||||||| ||||||| || ||||| |||| ||| |||||||||    
T  35037607 aagagaaatgatatttgtacaaccattttgatacaacttttgtacaatattctctctcatattcacattatgtttttattctctctcttcctt 35037699  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 54165234 - 54165147
Alignment:
Q  146 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctct 233  Q
    |||||||||||||| ||||||||||       |||||||||  |||| ||| ||||| ||| ||| ||||||||||||||||| ||||    
T  54165234 aagagaaatgatatttgtacaaccattttactacaattttttgacaactttttctctcatactcacatgatgttattatcctctctct 54165147  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 4550334 - 4550424
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    |||||||||||| ||||||| ||       |||| |||| ||||| ||||||||  ||| | ||||||||||||||||||| |||||||||    
T  4550334 gagaaatgatatttgtacaatcattttgctacaactttttaacaactttctctcccatacttatatgatgttattatcctctctcttcctt 4550424  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 51224909 - 51224823
Alignment:
Q  148 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 234  Q
    |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||    
T  51224909 gagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatgttattatcctctctctt 51224823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 24235317 - 24235410
Alignment:
Q  145 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 238  Q
    ||||||||||||||| ||||||| ||       |||||||||| |||| ||||||||| ||| ||| || ||| | |||||||| |||||||||    
T  24235317 taagagaaatgatatttgtacaatcaatttgtgacaatttttgtacaactttctctctcatactcacataatggttttatcctctctcttcctt 24235410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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