View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_high_3 (Length: 563)
Name: NF0878_high_3
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 30 - 553
Target Start/End: Original strand, 33835433 - 33835955
Alignment:
| Q |
30 |
atcaagtcagaagtggaagctcgaagggagaggaagaagaagagtcagagttcgattcattaacaacttagtaactatgtaaaagttttaataatctgat |
129 |
Q |
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| T |
33835433 |
atcaagttagaagtggaagctcggagggagaggaagaagaagagtcagagttcgattcattaacaacttagtaactatgtaaaagttttaataatctgat |
33835532 |
T |
|
| Q |
130 |
tgagacataattcaagatgatctaaataaaagaagttgaagacgacaaggttgcgaaggttataaagatagcaagacaaagaacagagaaagaaagctaa |
229 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33835533 |
tgagacataatacaagatgatctaaataaaagaagttgaagatgacaaggttgcgaaggttagaaagatagcaagacaaagaacagagaaagaaagctaa |
33835632 |
T |
|
| Q |
230 |
tatatcaaaggcggttagggcaaatcaactatacttatttaaagagaaattgtgctatcagcgtggaagaagatcaatcaaaattttagttgagaaatca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33835633 |
tatatcaaaggcggttagggcaaatcaactatacttatttaaagagaaattgtgctatcagcgtggaagaagatcaatcaaaattttagctgagaaatca |
33835732 |
T |
|
| Q |
330 |
taaattatcgttagggtaattcgttcgaggagcttaataactcacttagtcgttggcgagtgagacaaatgtagcttgtcaactagtttgcatcataaag |
429 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835733 |
taaattatcgttagggtaattcattcgaggagcttaataactcacttagtcgttggtgagtgagacaaatgtagcttgtcaactagtttgcatcataaag |
33835832 |
T |
|
| Q |
430 |
tgtaggtaattaatcatttgcatcacttataaatttcattggtctataaataccatttgtaaatttcactatagataaaatttagtcaatcaaacaactt |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33835833 |
tgtaggtaattaatcatttgcatcacttataaatttcattggtctataaataccatttgtaaatttcactataaataaaatttagtcaatcaaacaactt |
33835932 |
T |
|
| Q |
530 |
attttacttgcaatttcacctatg |
553 |
Q |
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||||||| ||| |||||||||||| |
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| T |
33835933 |
attttacctgc-atttcacctatg |
33835955 |
T |
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