View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0878_high_34 (Length: 219)
Name: NF0878_high_34
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 50308048 - 50307898
Alignment:
| Q |
20 |
cttttgatcttctactttttctttcgcctcgataacttctccttcatttgttgaatcattcatttcttttttatcactctcattaatgttgccttcttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50308048 |
cttttgatcttctactttttctttcgcctcgataacttctccttcatttgttgaatcattcatttcttttttatcactctcattaatgttcccttcttct |
50307949 |
T |
|
| Q |
120 |
tggtttgtatccgtattttcattttggtcttgattatcttcatgttcatct |
170 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
50307948 |
tggtttgtatccgtattctcattttgatcttgattatcttcatgttcatct |
50307898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3377 times since January 2019
Visitors: 6172