View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_high_4 (Length: 480)
Name: NF0878_high_4
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 48134224 - 48133811
Alignment:
| Q |
16 |
ataaaagaatcaaactccataaaagcactgagtaagaaaaacgagaggttcaagaatgctgagcaactaaataatattcattggtctgaaatgtagaagn |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48134224 |
ataaaagaatcaaactccataaaagcaccgagtaagaaaaacgagaggttcaagaatgctgagcaactaaagaatattcattggtctgaaatgtagaa-- |
48134127 |
T |
|
| Q |
116 |
nnnnnnnnntgtaaaaatcatcacagtaatgaaacgaaaatcttctctgtccttacgattgagaaatt--------aaacaatatcaatgtggcttgtgc |
207 |
Q |
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|||| |||||||||| ||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
48134126 |
aaaaaaatctgtataaatcatcactgtaatgaaacgaaaatcttatttgtccttacaattgagaaattgagaaattaaacaatatcaatgtggcttgtgc |
48134027 |
T |
|
| Q |
208 |
tgttgaaaggaacacgggaatagaaaacaagtcatggggaattagggaatttccaatttgtcaccataaattaaattctaaactggtgttgagttgccgc |
307 |
Q |
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| T |
48134026 |
tgttgaaaggaacacggtaatagaaaacaagtcatgggtaattagggaatttccaatttgtcaccataaattaaattccaaactggcgttgagttgccgc |
48133927 |
T |
|
| Q |
308 |
aaaagcttcattttctagcttttcaaaaacgggcgttgggggctagaaccacgtttggtagaatcccgtttgcagttatccaaacacctaagaaaatgtt |
407 |
Q |
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| T |
48133926 |
aaaagcttcattttctagcttttcataaacgggcgttgggggctagaaccacgtttggtagaatcccgtttgcagttatccaaacacctaagaaaatgtt |
48133827 |
T |
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| Q |
408 |
gaaaccacgtttcagc |
423 |
Q |
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| T |
48133826 |
gaaaccacgtttcagc |
48133811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 188 - 427
Target Start/End: Original strand, 4068994 - 4069234
Alignment:
| Q |
188 |
aatatcaatgtggcttgtgctgttgaaaggaacacgggaatagaaaacaagtcatggggaattagggaatttccaatttgtcaccataaattaaattcta |
287 |
Q |
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| T |
4068994 |
aatatcaatgcggcttgtgttgttgaaatgaacacggtaatagaaaacaagtcatgggtaattagggaattttcaatttgtcaccataaattaaatttca |
4069093 |
T |
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| Q |
288 |
aactggtgttgagttgccgcaaaagcttcattttctagcttttcaaaaacgggcgtt-gggggctagaaccacgtttggtagaatcccgtttgcagttat |
386 |
Q |
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| T |
4069094 |
aactggtgttgagttgccgcaaaagcttcattttctagcttttcagaaacgggcgttggggggctagaaccacgtttgctagaatcccgtttgcagttat |
4069193 |
T |
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| Q |
387 |
ccaaacacctaagaaaatgttgaaaccacgtttcagccttt |
427 |
Q |
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| T |
4069194 |
ccaaacacctaagaaaatgttgaaaccatgtttgagccttt |
4069234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 4068952 - 4068980
Alignment:
| Q |
175 |
tgagaaattaaacaatatcaatgtggctt |
203 |
Q |
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| T |
4068952 |
tgagaaattaaacaatatcaatgtggctt |
4068980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 31563168 - 31563512
Alignment:
| Q |
16 |
ataaaagaatcaaactccataaaagcactgagtaagaaaaacgagaggttcaagaatgctgagcaactaaataatattcattggtctgaaatgtagaagn |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
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| T |
31563168 |
ataaaagtatcaaactccataaaagcactgagtaagaaaaacgagaggttcaagaatgttgagaaactaaataatattcattggtctgaaatggagaa-- |
31563265 |
T |
|
| Q |
116 |
nnnnnnnnntgtaaaaatcatcacagtaatgaaacgaaaatcttctctgtccttacgattgagaaa----------------ttaaacaatatcaatgtg |
199 |
Q |
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|||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
31563266 |
aaaaaaatctgtataaatcatcactgtaatgaaacgaaaatcttctatgtccttacaattgagaaacagagaaattgagaaattaaacaatatcaatgtg |
31563365 |
T |
|
| Q |
200 |
gcttgtgctgttgaaaggaacacgggaatagaaaacaagtcatggggaattagggaatttccaatttgtcaccataaattaaattctaaactggtgttga |
299 |
Q |
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|||| || ||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |
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| T |
31563366 |
gcttttgatgttgaaagcaacacggtaa--gaaaacaagtcatgggtaattaaggaatttccaatttatcaccataaattaaattccaaactggcgttga |
31563463 |
T |
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| Q |
300 |
gttgccgcaaaagcttcattttctagcttttcaaaaacgggcgttgggg |
348 |
Q |
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| T |
31563464 |
gttgccgcaaaaggttcattttctagctttttagaaacgggcgttgggg |
31563512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 31563518 - 31563563
Alignment:
| Q |
374 |
cgtttgcagttatccaaacacctaagaaaatgttgaaaccacgtttc |
420 |
Q |
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| T |
31563518 |
cgtttgcagttatccaaacatctaag-aaatgttgaaaccacgtttc |
31563563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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