View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_10 (Length: 434)
Name: NF0878_low_10
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 87 - 422
Target Start/End: Original strand, 40617665 - 40618004
Alignment:
| Q |
87 |
gaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaatag |
186 |
Q |
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| T |
40617665 |
gaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctaaaaaaacaagatttgatatctgagccattgagattagaatag |
40617764 |
T |
|
| Q |
187 |
agagtgagtagattttgtgtgctcgagcttcaagtgttactttggcatatatagggcaattgcatgtccatatatatagagtcccaaatgttgtattgta |
286 |
Q |
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| T |
40617765 |
agagtgagtagtttttgtgtgcttgagcttcaagtgttactttggcatatatagggcaattgcatgtccatatatatagagtcccaaatgttgtattgta |
40617864 |
T |
|
| Q |
287 |
cccaccatggag---ttattatacctaact-agaatacaaattgagcatctaattttgaaaattggaacaaattgcaagttttgactagtttttgcgagt |
382 |
Q |
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| T |
40617865 |
cccaccatggagttattattatacctaaatcagaatacaaattgagcatctaattttgaaaattggaacaaatagcaagttttgactagtttttgcgagt |
40617964 |
T |
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| Q |
383 |
cttttaatcatacttaattcattctaaactataatatatt |
422 |
Q |
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| T |
40617965 |
cttttaattatacttaattcattctaaactataagatatt |
40618004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 40640960 - 40640878
Alignment:
| Q |
102 |
aggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaat |
184 |
Q |
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||||||||| |||||||||||| |||| ||||||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
40640960 |
aggaatggaatgtttatgatgttgaaaaggaaaatggaagctaaaaaaacaagatttgaaacgtgagccattgagattagaat |
40640878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 40628426 - 40628503
Alignment:
| Q |
280 |
tattgtacccaccatggagttattatacctaactagaatac-aaattgagcatctaattttgaaaattggaacaaatt |
356 |
Q |
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||||||||||| || |||||||||| ||||||||| || || ||||| ||| || || ||||||||||||||||||| |
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| T |
40628426 |
tattgtacccatcaaggagttattacacctaactaaaaaacaaaattcagcctcctatgttgaaaattggaacaaatt |
40628503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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