View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_11 (Length: 431)
Name: NF0878_low_11
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 52466667 - 52467061
Alignment:
| Q |
13 |
aatatccttgcctgaaaacatcactaagatatgaaaacaatatccttcatatcatagataagtgttgtcttcatatcacatacaattgaaggaaacgtat |
112 |
Q |
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| T |
52466667 |
aatatccttgcctgaaaacatcactaagatatgaaaacaatatccttcatatcatagataagtgttgtcttcatatcacatacaattgaaggaaacgtat |
52466766 |
T |
|
| Q |
113 |
ttcgttggaaatattatctgaaccagcatgattagtactaattatctacattattctttcactgactatgttgtttctaagaggatgccggcatttgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52466767 |
ttcgttggaaatattatctgaaccagcatgattagtactaattatctatattattctttcactgactatgttgtttctaagaggatgccggcatttgaaa |
52466866 |
T |
|
| Q |
213 |
actttaactgaacctctgattttccagtaaggttctttctaggaaaggttctctctatttttccttgggtgaaattgaaaggtcttttcttgttattaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52466867 |
actttaactgaacctctgattttccagtaaggttctttctaggaaaggttctctctatttttccttgggtgaaattgaaaggtcttttcttgttattaca |
52466966 |
T |
|
| Q |
313 |
aaaatgagaagttctgattaggattaaagc------nnnnnnnnnnngacccatttagccttgataccatgtcaagagtaaatatcctacctgat |
401 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52466967 |
aaaatgagaagttctgattaggattaaagcaaaaagaaaaaaaaaaagacccatttagccttgataccatgtcaagagtaaatatcctacctgat |
52467061 |
T |
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