View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_13 (Length: 410)
Name: NF0878_low_13
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 84 - 313
Target Start/End: Complemental strand, 35354525 - 35354292
Alignment:
| Q |
84 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnnnnn- |
182 |
Q |
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| T |
35354525 |
aatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaa |
35354426 |
T |
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| Q |
183 |
---ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354425 |
aaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaat |
35354326 |
T |
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| Q |
280 |
agaaatccaaatctggttgtgtagcattctgatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35354325 |
agaaatccaaatctggttgtgtagcattctgatc |
35354292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 35369456 - 35369328
Alignment:
| Q |
183 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
282 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
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| Q |
283 |
aatccaaatctggttgtgtagcattctga |
311 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
35369356 |
aatccaaatctgattgtgtagcattctga |
35369328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 35378323 - 35378212
Alignment:
| Q |
200 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
299 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
300 |
gtagcattctga |
311 |
Q |
| |
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|||||||||||| |
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| T |
35378223 |
gtagcattctga |
35378212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 19683783 - 19683663
Alignment:
| Q |
191 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
290 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
291 |
tctggttgtgtagcattctga |
311 |
Q |
| |
|
|||| || ||||||||||||| |
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|
| T |
19683683 |
tctgattatgtagcattctga |
19683663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 19632560 - 19632678
Alignment:
| Q |
191 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
290 |
Q |
| |
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||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
291 |
tctggttgtgtagcattct |
309 |
Q |
| |
|
||||| ||||||||||||| |
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| T |
19632660 |
tctggctgtgtagcattct |
19632678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 19684091 - 19684048
Alignment:
| Q |
84 |
aatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
127 |
Q |
| |
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|||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
19684091 |
aatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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