View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0878_low_14 (Length: 406)

Name: NF0878_low_14
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0878_low_14
NF0878_low_14
[»] chr7 (37 HSPs)
chr7 (235-376)||(12776196-12776339)
chr7 (205-328)||(7041528-7041655)
chr7 (64-176)||(12978467-12978580)
chr7 (49-110)||(29021234-29021295)
chr7 (49-110)||(29029658-29029719)
chr7 (51-114)||(21662949-21663012)
chr7 (55-110)||(25729000-25729055)
chr7 (64-176)||(4952337-4952450)
chr7 (64-176)||(10439949-10440062)
chr7 (64-176)||(18304332-18304445)
chr7 (49-114)||(1955676-1955742)
chr7 (64-176)||(13831512-13831625)
chr7 (64-176)||(13839543-13839656)
chr7 (132-176)||(30244787-30244832)
chr7 (132-176)||(30255424-30255469)
chr7 (50-103)||(560804-560859)
chr7 (50-103)||(570713-570768)
chr7 (50-103)||(5201423-5201478)
chr7 (50-103)||(5210552-5210607)
chr7 (50-103)||(16892054-16892109)
chr7 (66-110)||(20114066-20114110)
chr7 (66-110)||(38248005-38248049)
chr7 (132-174)||(30245582-30245625)
chr7 (64-110)||(17599307-17599353)
chr7 (50-101)||(27968260-27968313)
chr7 (50-101)||(27977713-27977766)
chr7 (132-176)||(4941585-4941630)
chr7 (66-103)||(15183336-15183373)
chr7 (66-103)||(15197957-15197994)
chr7 (66-103)||(16149794-16149831)
chr7 (66-103)||(29079697-29079734)
chr7 (66-103)||(29094449-29094486)
chr7 (66-103)||(40677801-40677838)
chr7 (66-103)||(44077541-44077578)
chr7 (66-103)||(48504721-48504758)
chr7 (66-110)||(2547708-2547752)
chr7 (66-110)||(2561577-2561621)
[»] chr6 (32 HSPs)
chr6 (235-376)||(31507702-31507845)
chr6 (64-176)||(5004073-5004186)
chr6 (49-110)||(16087491-16087552)
chr6 (64-176)||(35091616-35091729)
chr6 (64-176)||(5994711-5994824)
chr6 (64-114)||(13825778-13825828)
chr6 (64-176)||(25550307-25550420)
chr6 (64-172)||(25991866-25991975)
chr6 (64-176)||(30824469-30824582)
chr6 (64-114)||(15391551-15391601)
chr6 (64-102)||(21719967-21720005)
chr6 (64-176)||(11279849-11279962)
chr6 (64-176)||(25506481-25506594)
chr6 (66-110)||(15140735-15140779)
chr6 (66-110)||(23985047-23985091)
chr6 (66-110)||(28127457-28127501)
chr6 (50-103)||(30997876-30997931)
chr6 (50-114)||(26526626-26526692)
chr6 (135-176)||(13490205-13490247)
chr6 (69-110)||(1539474-1539515)
chr6 (66-103)||(18109770-18109807)
chr6 (66-103)||(18124327-18124364)
chr6 (66-103)||(18207510-18207547)
chr6 (66-103)||(18222506-18222543)
chr6 (132-176)||(23925347-23925392)
chr6 (65-110)||(25651789-25651834)
chr6 (66-103)||(27049600-27049637)
chr6 (66-103)||(27059844-27059881)
chr6 (64-174)||(33298099-33298209)
chr6 (66-110)||(9246744-9246788)
chr6 (66-110)||(21360951-21360995)
chr6 (66-110)||(23964933-23964977)
[»] chr4 (24 HSPs)
chr4 (235-376)||(35860935-35861078)
chr4 (235-376)||(49782681-49782824)
chr4 (235-376)||(6249015-6249158)
chr4 (64-176)||(12996488-12996601)
chr4 (49-110)||(14720974-14721035)
chr4 (49-110)||(14739206-14739267)
chr4 (49-110)||(26212864-26212925)
chr4 (49-110)||(26221620-26221681)
chr4 (64-176)||(27343631-27343744)
chr4 (64-176)||(52295616-52295729)
chr4 (64-114)||(33188840-33188890)
chr4 (58-114)||(3424406-3424460)
chr4 (64-176)||(8094222-8094335)
chr4 (64-176)||(8103028-8103141)
chr4 (64-176)||(21532245-21532357)
chr4 (131-176)||(10638340-10638386)
chr4 (64-110)||(24922441-24922487)
chr4 (64-176)||(4523620-4523733)
chr4 (50-103)||(4749909-4749964)
chr4 (66-110)||(19647352-19647396)
chr4 (66-110)||(19772269-19772313)
chr4 (63-176)||(12428417-12428531)
chr4 (66-110)||(10784475-10784519)
chr4 (50-103)||(21816657-21816712)
[»] chr1 (23 HSPs)
chr1 (235-376)||(48773280-48773423)
chr1 (193-328)||(6304824-6304963)
chr1 (235-376)||(37387096-37387239)
chr1 (64-176)||(31539966-31540079)
chr1 (64-176)||(31548535-31548648)
chr1 (63-176)||(44320131-44320245)
chr1 (49-110)||(18700156-18700217)
chr1 (64-176)||(35104004-35104117)
chr1 (49-114)||(29243689-29243753)
chr1 (63-114)||(8241437-8241488)
chr1 (51-114)||(28457631-28457694)
chr1 (64-176)||(3432830-3432943)
chr1 (66-110)||(8579369-8579413)
chr1 (66-110)||(12465698-12465742)
chr1 (50-103)||(31551272-31551327)
chr1 (50-103)||(31560400-31560455)
chr1 (50-103)||(38125990-38126045)
chr1 (64-114)||(41746632-41746683)
chr1 (66-103)||(3352965-3353002)
chr1 (66-103)||(16132985-16133022)
chr1 (132-176)||(29221496-29221541)
chr1 (66-103)||(46779323-46779360)
chr1 (66-110)||(34339192-34339236)
[»] chr3 (41 HSPs)
chr3 (193-328)||(11310090-11310226)
chr3 (237-376)||(37847-37987)
chr3 (64-176)||(50824364-50824477)
chr3 (64-176)||(50851383-50851496)
chr3 (49-110)||(7084448-7084509)
chr3 (49-110)||(7099129-7099190)
chr3 (64-176)||(27341275-27341388)
chr3 (50-110)||(30104774-30104834)
chr3 (63-176)||(17919211-17919325)
chr3 (50-110)||(1477768-1477828)
chr3 (64-176)||(41006568-41006681)
chr3 (64-176)||(41015348-41015461)
chr3 (64-113)||(43470493-43470542)
chr3 (64-176)||(14538544-14538658)
chr3 (60-176)||(17933667-17933784)
chr3 (49-108)||(33187147-33187206)
chr3 (63-176)||(16816144-16816257)
chr3 (64-110)||(31276593-31276639)
chr3 (64-176)||(8154584-8154697)
chr3 (64-176)||(9525374-9525487)
chr3 (50-103)||(1006724-1006779)
chr3 (66-110)||(4505979-4506023)
chr3 (64-104)||(16288692-16288732)
chr3 (66-110)||(17618130-17618174)
chr3 (66-110)||(17657639-17657683)
chr3 (50-103)||(24218599-24218654)
chr3 (50-103)||(25262556-25262611)
chr3 (50-103)||(25272094-25272149)
chr3 (66-110)||(27976561-27976605)
chr3 (64-111)||(9555048-9555095)
chr3 (50-101)||(10714553-10714606)
chr3 (50-101)||(10723250-10723303)
chr3 (132-176)||(2211251-2211296)
chr3 (66-103)||(5146824-5146861)
chr3 (66-103)||(6296044-6296081)
chr3 (132-176)||(17628277-17628322)
chr3 (66-110)||(11920739-11920783)
chr3 (66-110)||(11935311-11935355)
chr3 (66-110)||(13272679-13272723)
chr3 (66-110)||(22950638-22950682)
chr3 (66-110)||(22964612-22964656)
[»] scaffold0090 (1 HSPs)
scaffold0090 (235-376)||(43859-44002)
[»] chr8 (22 HSPs)
chr8 (235-372)||(7826642-7826781)
chr8 (235-376)||(25214332-25214475)
chr8 (235-328)||(30330522-30330616)
chr8 (235-376)||(7779675-7779818)
chr8 (64-176)||(17973577-17973690)
chr8 (64-176)||(30938294-30938407)
chr8 (49-101)||(36578870-36578922)
chr8 (49-110)||(36254923-36254984)
chr8 (64-176)||(25579752-25579865)
chr8 (64-176)||(26875994-26876107)
chr8 (64-110)||(25700282-25700328)
chr8 (64-176)||(4839722-4839835)
chr8 (64-176)||(39837502-39837615)
chr8 (64-176)||(39845545-39845658)
chr8 (64-112)||(1407013-1407061)
chr8 (50-110)||(14202360-14202422)
chr8 (50-110)||(14217000-14217062)
chr8 (71-113)||(19368279-19368321)
chr8 (65-110)||(6585213-6585258)
chr8 (64-176)||(26873544-26873657)
chr8 (66-103)||(31210009-31210046)
chr8 (50-103)||(31003100-31003155)
[»] chr5 (47 HSPs)
chr5 (235-376)||(37378391-37378534)
chr5 (196-274)||(18133441-18133519)
chr5 (196-274)||(43521102-43521180)
chr5 (50-110)||(23027993-23028053)
chr5 (64-176)||(20372853-20372966)
chr5 (64-176)||(20398575-20398688)
chr5 (64-176)||(24956786-24956899)
chr5 (64-176)||(24965249-24965362)
chr5 (64-176)||(23350016-23350129)
chr5 (63-110)||(26756699-26756746)
chr5 (235-274)||(27887224-27887263)
chr5 (64-110)||(21852580-21852626)
chr5 (64-110)||(21869104-21869150)
chr5 (65-111)||(23037923-23037969)
chr5 (64-176)||(31421801-31421914)
chr5 (63-114)||(21929311-21929361)
chr5 (66-103)||(20375797-20375834)
chr5 (66-103)||(20384588-20384625)
chr5 (64-176)||(28843952-28844065)
chr5 (64-176)||(28852562-28852675)
chr5 (64-176)||(29186218-29186331)
chr5 (66-103)||(33846277-33846314)
chr5 (64-176)||(43597986-43598099)
chr5 (64-176)||(43603478-43603591)
chr5 (64-176)||(43608970-43609083)
chr5 (50-103)||(11804815-11804870)
chr5 (50-103)||(11814891-11814946)
chr5 (50-103)||(12182017-12182072)
chr5 (66-110)||(21988620-21988664)
chr5 (66-110)||(21997264-21997308)
chr5 (66-110)||(23606368-23606412)
chr5 (66-110)||(23635085-23635129)
chr5 (66-110)||(23829022-23829066)
chr5 (66-110)||(23837763-23837807)
chr5 (50-110)||(3479244-3479306)
chr5 (50-110)||(3494014-3494076)
chr5 (63-110)||(17638318-17638365)
chr5 (51-103)||(27225614-27225668)
chr5 (51-103)||(27235085-27235139)
chr5 (66-101)||(33837701-33837736)
chr5 (50-101)||(12172589-12172642)
chr5 (64-176)||(1728099-1728212)
chr5 (66-103)||(26174828-26174865)
chr5 (66-110)||(26080829-26080873)
chr5 (66-110)||(26090808-26090852)
chr5 (50-103)||(27061804-27061859)
chr5 (50-103)||(36456383-36456438)
[»] chr2 (36 HSPs)
chr2 (235-376)||(28661990-28662133)
chr2 (235-376)||(37820823-37820966)
chr2 (235-376)||(41915100-41915243)
chr2 (64-176)||(14582937-14583050)
chr2 (64-176)||(15944497-15944610)
chr2 (64-176)||(15953012-15953125)
chr2 (64-176)||(35138605-35138718)
chr2 (64-176)||(35146941-35147054)
chr2 (64-176)||(38168297-38168410)
chr2 (64-176)||(41233784-41233897)
chr2 (55-114)||(35303812-35303871)
chr2 (64-110)||(28479074-28479120)
chr2 (64-176)||(20372254-20372366)
chr2 (64-176)||(42565869-42565982)
chr2 (64-176)||(42574493-42574606)
chr2 (50-103)||(2650767-2650822)
chr2 (49-141)||(21110285-21110376)
chr2 (66-110)||(27683381-27683425)
chr2 (50-103)||(42383785-42383840)
chr2 (50-103)||(42398645-42398700)
chr2 (51-103)||(33309131-33309185)
chr2 (50-101)||(34434817-34434870)
chr2 (64-114)||(35037931-35037981)
chr2 (66-103)||(3757399-3757436)
chr2 (66-103)||(3767465-3767502)
chr2 (66-103)||(10687444-10687481)
chr2 (66-103)||(11649095-11649132)
chr2 (66-103)||(16272494-16272531)
chr2 (66-103)||(16281653-16281690)
chr2 (66-103)||(25261691-25261728)
chr2 (66-103)||(28475803-28475840)
chr2 (66-103)||(29853070-29853107)
chr2 (66-103)||(30526870-30526907)
chr2 (50-103)||(21852449-21852504)
chr2 (50-103)||(21860886-21860941)
chr2 (66-110)||(31357113-31357157)
[»] scaffold0083 (1 HSPs)
scaffold0083 (64-176)||(15825-15938)
[»] scaffold0073 (1 HSPs)
scaffold0073 (205-328)||(17811-17938)
[»] scaffold0497 (1 HSPs)
scaffold0497 (55-176)||(11005-11128)
[»] scaffold0170 (1 HSPs)
scaffold0170 (64-176)||(7130-7243)
[»] scaffold0173 (1 HSPs)
scaffold0173 (64-114)||(869-919)
[»] scaffold0156 (1 HSPs)
scaffold0156 (64-176)||(35296-35409)
[»] scaffold0222 (1 HSPs)
scaffold0222 (56-111)||(20414-20469)
[»] scaffold0632 (1 HSPs)
scaffold0632 (64-113)||(4466-4515)
[»] scaffold0111 (1 HSPs)
scaffold0111 (64-176)||(33047-33160)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-176)||(121240-121345)
[»] scaffold0315 (1 HSPs)
scaffold0315 (64-114)||(10596-10646)
[»] scaffold0043 (1 HSPs)
scaffold0043 (64-110)||(61041-61087)
[»] scaffold0209 (1 HSPs)
scaffold0209 (64-176)||(24-137)
[»] scaffold0455 (1 HSPs)
scaffold0455 (66-110)||(6056-6100)
[»] scaffold0047 (2 HSPs)
scaffold0047 (66-110)||(59745-59789)
scaffold0047 (66-110)||(81164-81208)
[»] scaffold0903 (1 HSPs)
scaffold0903 (49-107)||(3314-3372)
[»] scaffold0431 (1 HSPs)
scaffold0431 (63-176)||(151-265)
[»] scaffold0290 (1 HSPs)
scaffold0290 (64-114)||(15761-15811)
[»] scaffold0016 (2 HSPs)
scaffold0016 (64-110)||(23544-23590)
scaffold0016 (132-176)||(23476-23521)
[»] scaffold2036 (1 HSPs)
scaffold2036 (66-103)||(1076-1113)
[»] scaffold0605 (1 HSPs)
scaffold0605 (65-110)||(737-782)
[»] scaffold0148 (1 HSPs)
scaffold0148 (66-103)||(39850-39887)
[»] scaffold0039 (1 HSPs)
scaffold0039 (132-176)||(40841-40886)
[»] scaffold0404 (1 HSPs)
scaffold0404 (66-110)||(15412-15456)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 12776339 - 12776196
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| | |||    
T  12776339 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaacgtt 12776240  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  12776239 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 12776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 7041528 - 7041655
Alignment:
Q  205 ataacaatcacttgaactattttatttcttccaa---gtctttggaatcaaatgtcgtgaaacaaaga-aaaaagagacagactatttaaaaagtttgta 300  Q
    |||||||||| |||||||||||||||||| ||||   ||||||||||  || |||||||||||| ||| ||||| ||| || ||||||| || |||||||    
T  7041528 ataacaatcatttgaactattttatttctcccaattagtctttggaagtaagtgtcgtgaaacagagagaaaaatagatagcctatttagaaggtttgta 7041627  T
Q  301 ctaaattaatttcattcaaaatattaca 328  Q
    | ||||||||||||||||||||||||||    
T  7041628 ccaaattaatttcattcaaaatattaca 7041655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 12978580 - 12978467
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  12978580 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 12978481  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  12978480 aagtggtcaaaatt 12978467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 29021295 - 29021234
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  29021295 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 29021234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 29029719 - 29029658
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  29029719 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 29029658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 21662949 - 21663012
Alignment:
Q  51 tcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  |||||||||||| |||||||    
T  21662949 tcccttcggaaccaaatgaggtacttcaaagtaacctccctgttgaaatttcgtctaaaacgac 21663012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 25729000 - 25729055
Alignment:
Q  55 ttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  25729000 ttcggaatcaaataaggtacttcaaaataaccttcctgccgaaatttcgtttgaaa 25729055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 4952337 - 4952450
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  | | || |||  ||||||||||| |||| ||||| |||||| ||    
T  4952337 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaatagataa 4952436  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  4952437 aagtggtcaaaatt 4952450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 10440062 - 10439949
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||  |  |   || |||  ||||||||||| |||| || || |||||||||    
T  10440062 aaatgaggtactttaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggcaagaatagagaa 10439963  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  10439962 aagtggtcaaaatt 10439949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 18304332 - 18304445
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  18304332 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 18304431  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  18304432 aagtggtcaaaatt 18304445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 1955676 - 1955742
Alignment:
Q  49 tgtcccttcggaatcaaa-tgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||| |||| |||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  1955676 tgtcccttcggaaccaaaatgaggtgcttcaaagtaacctctctgccgaaattttgtctgaaacgac 1955742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 13831625 - 13831512
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  13831625 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 13831526  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  13831525 aagtggtcaaaatt 13831512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 13839656 - 13839543
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||||| ||| ||||||| |    
T  13839656 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatggataagaatagagga 13839557  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  13839556 aagtggtcaaaatt 13839543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 30244832 - 30244787
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  30244832 aaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatt 30244787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 30255469 - 30255424
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  30255469 aaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatt 30255424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 560804 - 560859
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  560804 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 560859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 570713 - 570768
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  570713 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 570768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 5201423 - 5201478
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  5201423 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 5201478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 5210552 - 5210607
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  5210552 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 5210607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 16892054 - 16892109
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  16892054 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 16892109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 20114066 - 20114110
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  20114066 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 20114110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 38248049 - 38248005
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  38248049 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 38248005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 30245625 - 30245582
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaa 174  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  30245625 aaaatacgaataaaatggataaaaatagagaaaagtggtcaaaa 30245582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 17599307 - 17599353
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||| | ||||||||||||| || |||||    
T  17599307 aaatgaggtacttcaaagtaacttccctgccgaaattttgtttgaaa 17599353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 27968260 - 27968313
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  27968260 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattt 27968313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 27977713 - 27977766
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  27977713 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattt 27977766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 4941585 - 4941630
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  4941585 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatt 4941630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 15183373 - 15183336
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  15183373 atgaggtacttcaaagtatcctccctgccgaaatttcg 15183336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 15197994 - 15197957
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  15197994 atgaggtacttcaaagtatcctccctgccgaaatttcg 15197957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 16149794 - 16149831
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  16149794 atgaggtacttcaaagtatcctccctgccgaaatttcg 16149831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 29079734 - 29079697
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  29079734 atgaggtacttcaaagtatcctccctgccgaaatttcg 29079697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 29094486 - 29094449
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  29094486 atgaggtacttcaaagtatcctccctgccgaaatttcg 29094449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 40677838 - 40677801
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  40677838 atgaggtacttcaaagtatcctccctgccgaaatttcg 40677801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 44077541 - 44077578
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  44077541 atgaggtacttcaaagtatcctccctgccgaaatttcg 44077578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 48504721 - 48504758
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  48504721 atgaggtacttcaaagtatcctccctgccgaaatttcg 48504758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 2547752 - 2547708
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  2547752 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 2547708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 2561621 - 2561577
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  2561621 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 2561577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 31507845 - 31507702
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatatta-catgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||||| |||||||||||||||||||||||| || |||    
T  31507845 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattaccacgtt 31507746  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  31507745 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 31507702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 5004186 - 5004073
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  5004186 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 5004087  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  5004086 aagtggtcaaaatt 5004073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 16087552 - 16087491
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  16087552 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 16087491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 35091616 - 35091729
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  | | || |||  |||||| |||| |||| ||||| |||||||||    
T  35091616 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaatatgaataaaatgggtaagaatagagaa 35091715  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  35091716 aagtggtcaaaatt 35091729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 5994824 - 5994711
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||| ||||||||||||  |  | | || |||  ||||||||||| |||| ||||| |||||||||    
T  5994824 aaatgaggtacttcaaagtaacctctttgccaaaattttgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaatagagaa 5994725  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  5994724 aagtggtcaaaatt 5994711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 13825828 - 13825778
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  13825828 aaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgac 13825778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 25550420 - 25550307
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  ||||| ||||||||| |||||||||  |  |   || |||  |||||| |||| |||| ||||| |||||||||    
T  25550420 aaatgaggtacttcaaagtaacctctctgccaaaatttcgtttgaaacgacgaaaattcccgactttaaaaatatgaataaaatgggtaagaatagagaa 25550321  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  25550320 aagtggtcaaaatt 25550307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 25991975 - 25991866
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  || |||||||||| |||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  25991975 aaatgaggtacttcaaagtaacctctctaccgaaatttcttctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 25991876  T
Q  163 aagtggtcaa 172  Q
    ||||||||||    
T  25991875 aagtggtcaa 25991866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 30824469 - 30824582
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  |   || |||  ||||||| ||| |||| ||||| |||||||||    
T  30824469 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaagaatagagaa 30824568  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  30824569 aagtggtcaaaatt 30824582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 15391551 - 15391601
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||    
T  15391551 aaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgac 15391601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 21719967 - 21720005
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttc 102  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21719967 aaatgaggtacttcaaagtaacctccctgccgaaatttc 21720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 11279962 - 11279849
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  11279962 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 11279863  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  11279862 aagtggtcaaaatt 11279849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 25506481 - 25506594
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||| || ||||||||||  ||||||||||||||||| |||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  25506481 aaatgaggtattttaaagtaacctctctgccgaaatttcgtctaaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 25506580  T
Q  163 aagtggtcaaaatt 176  Q
    ||||| ||||||||    
T  25506581 aagtgatcaaaatt 25506594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 15140779 - 15140735
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  15140779 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 15140735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23985047 - 23985091
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  23985047 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 23985091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 28127457 - 28127501
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  28127457 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 28127501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 30997876 - 30997931
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  30997876 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 30997931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 26526626 - 26526692
Alignment:
Q  50 gtcccttcggaatcaaa--tgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||||| ||||  ||||||| ||||||||||||   ||||||| |||||||||||||||||    
T  26526626 gtcccttcggaaccaaaaatgaggtaattcaaagtaaccactctgccgatatttcgtctgaaacgac 26526692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 13490247 - 13490205
Alignment:
Q  135 atacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  13490247 atacgaataaaatggataaaaatagagaaaagtggtcaaaatt 13490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 1539474 - 1539515
Alignment:
Q  69 aggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||    
T  1539474 aggtacttcaaagtatcctccctgccgaaattttgtctgaaa 1539515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 18109807 - 18109770
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  18109807 atgaggtacttcaaagtatcctccctgccgaaatttcg 18109770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 18124364 - 18124327
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  18124364 atgaggtacttcaaagtatcctccctgccgaaatttcg 18124327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 18207510 - 18207547
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  18207510 atgaggtacttcaaagtatcctccctgccgaaatttcg 18207547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 18222506 - 18222543
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  18222506 atgaggtacttcaaagtatcctccctgccgaaatttcg 18222543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 23925392 - 23925347
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  23925392 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatt 23925347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 25651834 - 25651789
Alignment:
Q  65 aatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||| ||||||||||| |||| ||||||||||| |||||    
T  25651834 aatgaggtactccaaagtaacctccctgtcgaaatttcgtttgaaa 25651789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 27049600 - 27049637
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  27049600 atgaggtacttcaaagtatcctccctgccgaaatttcg 27049637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 27059844 - 27059881
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  27059844 atgaggtacttcaaagtatcctccctgccgaaatttcg 27059881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 33298209 - 33298099
Alignment:
Q  64 aaatgaggtacttcaaagtaac-cttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagaga 161  Q
    |||||||||||||||||||||| |||  || |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| |||||  |||||||    
T  33298209 aaatgaggtacttcaaagtaactctt--tgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaaggatagaga 33298112  T
Q  162 aaagtggtcaaaa 174  Q
    |||||||||||||    
T  33298111 aaagtggtcaaaa 33298099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 9246788 - 9246744
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  9246788 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 9246744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 21360951 - 21360995
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  21360951 atgaggtacttcaaagtatcctccctgctgaaattttgtctgaaa 21360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23964933 - 23964977
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  23964933 atgaggtacttcaaagtatcctccctgctgaaattttgtctgaaa 23964977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 35860935 - 35861078
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| | |||    
T  35860935 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaacgtt 35861034  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  35861035 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 35861078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 49782824 - 49782681
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| |||||    
T  49782824 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaatgtt 49782725  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  ||||||| |||  |||||| ||||||||||    
T  49782724 tatttcaaatattacaatgtgttcacttatttaaaaagtttgta 49782681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 6249015 - 6249158
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| ||  |||||| || |||||||| ||||||||||||||||||||||||| |  ||    
T  6249015 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcttatttagaacgtttgtaccaaattaatttcattcaaaatattacaacatt 6249114  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  6249115 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 6249158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 12996601 - 12996488
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||  |  | | || |||  ||||||||||| |||| ||||| |||||||||    
T  12996601 aaatgaggtacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaatagagaa 12996502  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  12996501 aagtggtcaaaatt 12996488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 14720974 - 14721035
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  14720974 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 14721035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 14739206 - 14739267
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  14739206 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 14739267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 26212864 - 26212925
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  26212864 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 26212925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 26221620 - 26221681
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||    
T  26221620 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtttgaaa 26221681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 27343631 - 27343744
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  |||  ||||||||||||||||||||  |  |   || |||  ||||||||||| |||| |||||||||||||||    
T  27343631 aaatgaggtacttcaaagtaacctctctgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaaaaatagagaa 27343730  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  27343731 aagtggtcaaaatt 27343744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 52295729 - 52295616
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  52295729 aaatgaggtacttcaaagtaatctctctgccgaaattttgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 52295630  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  52295629 aagtggtcaaaatt 52295616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 33188890 - 33188840
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  33188890 aaatgaggtaattcaaagtaaccttcttgctgaaatttcgtctgaaacgac 33188840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 3424460 - 3424406
Alignment:
Q  58 ggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||| |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  3424460 ggaaccaaatgaggtacttcaaagtaacct--ctgccgaaatttcgtctggaacgac 3424406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 8094222 - 8094335
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  |   || |||  ||||||| ||| |||| ||||| |||||||||    
T  8094222 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaagaatagagaa 8094321  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  8094322 aagtggtcaaaatt 8094335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 8103028 - 8103141
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  |   || |||  ||||||| ||| |||| ||||| |||||||||    
T  8103028 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaagaatagagaa 8103127  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  8103128 aagtggtcaaaatt 8103141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 21532245 - 21532357
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    ||||||||||||||||||||| |||  || |||||||||||||||||||||  |  | | || |||  ||||||||||| |||||| |||  ||||||||    
T  21532245 aaatgaggtacttcaaagtaatctt-ttgtcgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatggataaggatagagaa 21532343  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  21532344 aagtggtcaaaatt 21532357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 10638386 - 10638340
Alignment:
Q  131 taaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  10638386 taaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatt 10638340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 24922487 - 24922441
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  24922487 aaatgaggtacttcaaagtaaccttcctggtgaaatttcgtttgaaa 24922441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 4523620 - 4523733
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||||| ||| ||||||| |    
T  4523620 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatggataagaatagagga 4523719  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  4523720 aagtggtcaaaatt 4523733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 4749909 - 4749964
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  4749909 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 4749964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 19647352 - 19647396
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  19647352 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 19647396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 19772313 - 19772269
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  19772313 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 19772269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 12428417 - 12428531
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagaga 161  Q
    |||||||||||||||||||||| ||    | |||||||||||||||||  ||  |  | |  |||||  ||||||||||| |||||| || |||||||||    
T  12428417 caaatgaggtacttcaaagtaaactcttcgtcgaaatttcgtctgaaataacgaaaatttctggctttaaaaatacgaataaaatgggtagaaatagaga 12428516  T
Q  162 aaagtggtcaaaatt 176  Q
    |||||||||||||||    
T  12428517 aaagtggtcaaaatt 12428531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 10784519 - 10784475
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  10784519 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 10784475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 21816657 - 21816712
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||| |||||||    
T  21816657 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccggaatttcg 21816712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 48773423 - 48773280
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| | |||    
T  48773423 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaacgtt 48773324  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  48773323 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 48773280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 328
Target Start/End: Complemental strand, 6304963 - 6304824
Alignment:
Q  193 acacaacaactgataacaatcacttgaactattttatttcttccaa---gtctttggaatcaaatgtcgtgaaacaaaga-aaaaagagacagactattt 288  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||   ||||||||||  || |||||||||||| ||| ||||| ||| || ||||||    
T  6304963 acacaacaactaataacaatcatttgaactattttatatctcccaattagtctttggaagtaagtgtcgtgaaacagagagaaaaatagatagcctattt 6304864  T
Q  289 aaaaagtttgtactaaattaatttcattcaaaatattaca 328  Q
    | || |||||||| ||||||||||||||||||||||||||    
T  6304863 agaaggtttgtaccaaattaatttcattcaaaatattaca 6304824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 37387239 - 37387096
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| ||  |||||| || |||||||| ||||||||||||||||||||||||| |  ||    
T  37387239 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcatatttagaacgtttgtaccaaattaatttcattcaaaatattacaacatt 37387140  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||| ||  |||||| ||| ||||||    
T  37387139 tatttcaaatattacaatgtgaacacttatttaaaaaatttgta 37387096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 31540079 - 31539966
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  31540079 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 31539980  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  31539979 aagtggtcaaaatt 31539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 31548648 - 31548535
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  31548648 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 31548549  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  31548548 aagtggtcaaaatt 31548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 44320131 - 44320245
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagat-ttattcggcttataaaatacgaattaaat-ggtaaaaatagag 160  Q
    ||||||||||||||  ||||||||| ||||| |||||||||||||||||||| |||  |  ||||| | |||||||||||| |||| ||||||||  |||    
T  44320131 caaatgaggtactttcaagtaacctccctgctgaaatttcgtctgaaacgac-gatccttctcggcgtttaaaatacgaataaaatgggtaaaaagcgag 44320229  T
Q  161 aaaagtggtcaaaatt 176  Q
    ||||||||||||||||    
T  44320230 aaaagtggtcaaaatt 44320245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 18700217 - 18700156
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||    
T  18700217 tgtcctttcggaatcaaatgaggtacttcaaagtaacctccctgtcgaaattttatctgaaa 18700156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 35104004 - 35104117
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   |  |||  ||||||||||| |||| ||||| |||||||||    
T  35104004 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccaactttaaaaatacgaataaaatgggtaagaatagagaa 35104103  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  35104104 aagtggtcaaaatt 35104117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 29243753 - 29243689
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |||| |||||    
T  29243753 tgtcccttcggaaccaattgaggtacttcaaagtaacctccctgcc-aaatttcgactgagacgac 29243689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 8241437 - 8241488
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||||||| ||||||||||  || ||||||||||||||||||||||    
T  8241437 caaatgaggtactttaaagtaacctctctaccgaaatttcgtctgaaacgac 8241488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 28457694 - 28457631
Alignment:
Q  51 tcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||| | ||| |||||| |||||||||||||||||  ||| |||||||||||||||||||||    
T  28457694 tccctttgaaattaaatgatgtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgac 28457631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 3432830 - 3432943
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  3432830 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 3432929  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  3432930 aagtggtcaaaatt 3432943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 8579413 - 8579369
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  8579413 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 8579369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 12465698 - 12465742
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  12465698 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 12465742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 31551327 - 31551272
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  31551327 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 31551272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 31560455 - 31560400
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  31560455 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 31560400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 38125990 - 38126045
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  38125990 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 38126045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 41746632 - 41746683
Alignment:
Q  64 aaatgaggtacttcaaagtaacct-tcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  41746632 aaatgaggtacttcaaagtaacctcttttgccgaaattttgtctgaaacgac 41746683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 3352965 - 3353002
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3352965 atgaggtacttcaaagtatcctccctgccgaaatttcg 3353002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 16133022 - 16132985
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  16133022 atgaggtacttcaaagtatcctccctgccgaaatttcg 16132985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 29221496 - 29221541
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  29221496 aaaatacgaataaaatgggtaaaaatagagaaaagtagtcaaaatt 29221541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 46779323 - 46779360
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  46779323 atgaggtacttcaaagtatcctccctgccgaaatttcg 46779360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 34339192 - 34339236
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| |||||||||||||  |||||||    
T  34339192 atgaggtacttcaaagtatcctccctgccgaaattttatctgaaa 34339236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 328
Target Start/End: Complemental strand, 11310226 - 11310090
Alignment:
Q  193 acacaacaactgataacaatcacttgaactattttatttcttccaagtctttggaatcaaatgtcgtgaaacaaagaaaaa-agagacagactatttaaa 291  Q
    ||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||  ||  ||||||||||| ||||||| | ||| || ||||||| |    
T  11310226 acacaacaactaataacaatcatttgaactattttattgctcccaagtctttggaagtaatcgtcgtgaaacagagaaaaagatagatagcctatttaga 11310127  T
Q  292 aagtttgtactaaattaatttcattcaaaatattaca 328  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11310126 aagtttgtaccaaattaatttcattcaaaatattaca 11310090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 37847 - 37987
Alignment:
Q  237 aagtctttggaatcaaatgtcgtgaaacaaagaaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtttgt 335  Q
    ||||| |||||||||||||||||||||||||||||||| ||| || ||||||| || ||||| || ||||||||||||||||||||||| | | |||| |    
T  37847 aagtcgttggaatcaaatgtcgtgaaacaaagaaaaaatagatagcctatttagaacgtttgcaccaaattaatttcattcaaaatattgcaacgtttat 37946  T
Q  336 ttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    |||||||||  |||||  ||||  |||||| ||||||||||    
T  37947 ttcaaatattacaatgcaatcacttatttaaaaagtttgta 37987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 50824477 - 50824364
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||  |  | | || |||  ||||||||||| |||| ||||| |||||||||    
T  50824477 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaatagagaa 50824378  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  50824377 aagtggtcaaaatt 50824364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 50851383 - 50851496
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||  |  | | || |||  ||||||||||| |||| ||||| |||||||||    
T  50851383 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaatagagaa 50851482  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  50851483 aagtggtcaaaatt 50851496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 7084448 - 7084509
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7084448 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaa 7084509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 7099129 - 7099190
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7099129 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaa 7099190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 27341275 - 27341388
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  |  |   || |||  |||||| |||| |||||| ||| |||||||||    
T  27341275 aaatgaggtacttcaaagtaacctttctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatatgaataaaatggataagaatagagaa 27341374  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  27341375 aagtggtcaaaatt 27341388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 30104834 - 30104774
Alignment:
Q  50 gtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30104834 gtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaa 30104774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 17919325 - 17919211
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagaga 161  Q
    |||||||||||||| ||||||||||  | | |||||||||||||||||  ||  |  | ||||||||  ||||||||||| |||||| ||||||||||||    
T  17919325 caaatgaggtactttaaagtaacctctccgacgaaatttcgtctgaaataacgaaaattttcggctttaaaaatacgaataaaatggataaaaatagaga 17919226  T
Q  162 aaagtggtcaaaatt 176  Q
    |||||||||||||||    
T  17919225 aaagtggtcaaaatt 17919211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 1477828 - 1477768
Alignment:
Q  50 gtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  1477828 gtcccttcggaactaaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaa 1477768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 41006681 - 41006568
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  41006681 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 41006582  T
Q  163 aagtggtcaaaatt 176  Q
    || |||||||||||    
T  41006581 aaatggtcaaaatt 41006568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 41015461 - 41015348
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  41015461 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 41015362  T
Q  163 aagtggtcaaaatt 176  Q
    || |||||||||||    
T  41015361 aaatggtcaaaatt 41015348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 43470493 - 43470542
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacga 113  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  43470493 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacga 43470542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 14538544 - 14538658
Alignment:
Q  64 aaatgaggtacttcaaagtaacct-tcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagaga 161  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||||  |  |   || |||  |||||| |||| |||||| ||| ||||||||    
T  14538544 aaatgaggtacttcaaagtaacctcttttgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatatgaataaaatggataagaatagaga 14538643  T
Q  162 aaagtggtcaaaatt 176  Q
    |||||||||||||||    
T  14538644 aaagtggtcaaaatt 14538658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 17933784 - 17933667
Alignment:
Q  60 aatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatag 158  Q
    ||||||||||||||||||||||||||||  | |  ||||||||||||||||  ||  |  | | || |||  ||||||||||| |||| |||||||||||    
T  17933784 aatcaaatgaggtacttcaaagtaacctctccgaagaaatttcgtctgaaataacgaaaatttccgactttaaaaatacgaataaaatgggtaaaaatag 17933685  T
Q  159 agaaaagtggtcaaaatt 176  Q
    |||||| |||||||||||    
T  17933684 agaaaattggtcaaaatt 17933667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 33187206 - 33187147
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctga 108  Q
    ||||||||||||  |||||||||||||||||||||| || ||| ||||||||||| ||||    
T  33187206 tgtcccttcggagccaaatgaggtacttcaaagtaatctccctaccgaaatttcgactga 33187147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 16816144 - 16816257
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatg-gtaaaaatagaga 161  Q
    ||||||||||||||||||||| |  ||| | | |||||||||||||||  ||  |  | | ||||||  ||||||||||| ||||| |||||||||||||    
T  16816144 caaatgaggtacttcaaagtacctctcc-gtcaaaatttcgtctgaaataacgaaaatttccggctttaaaaatacgaataaaatgagtaaaaatagaga 16816242  T
Q  162 aaagtggtcaaaatt 176  Q
    |||||||||||||||    
T  16816243 aaagtggtcaaaatt 16816257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 31276639 - 31276593
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||    
T  31276639 aaatgaggtacttcaaagtaaccttcttgtcgaaatttcgtttgaaa 31276593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 8154584 - 8154697
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  8154584 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 8154683  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  8154684 aagtggtcaaaatt 8154697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 9525374 - 9525487
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||| || ||||||||||| ||||||||||||||||| |||| ||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  9525374 aaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaacaacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 9525473  T
Q  163 aagtggtcaaaatt 176  Q
    ||||| ||||||||    
T  9525474 aagtgatcaaaatt 9525487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 1006724 - 1006779
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  1006724 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 1006779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 4505979 - 4506023
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  4505979 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 4506023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 16288732 - 16288692
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgt 104  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  16288732 aaatgaggtacttcaaagtaacctctctgccgaaatttcgt 16288692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 17618130 - 17618174
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  17618130 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 17618174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 17657683 - 17657639
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  17657683 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 17657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 24218599 - 24218654
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  24218599 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 24218654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 25262611 - 25262556
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  25262611 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 25262556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 25272149 - 25272094
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  25272149 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 25272094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 27976605 - 27976561
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  27976605 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 27976561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 9555048 - 9555095
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaac 111  Q
    |||||||||| || ||||||||||| ||||||||||||||||| ||||    
T  9555048 aaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaac 9555095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 10714553 - 10714606
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  10714553 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattt 10714606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 10723250 - 10723303
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  10723250 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattt 10723303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 2211296 - 2211251
Alignment:
Q  132 aaaatacgaattaaat-ggtaaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||    
T  2211296 aaaatacgaataaaataggtaagaatagagaaaagtggtcaaaatt 2211251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 5146824 - 5146861
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  5146824 atgaggtacttcaaagtatcctccctgccgaaatttcg 5146861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 6296044 - 6296081
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  6296044 atgaggtacttcaaagtatcctccctgccgaaatttcg 6296081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 17628322 - 17628277
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  17628322 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatt 17628277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 11920739 - 11920783
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  11920739 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 11920783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 11935311 - 11935355
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  11935311 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 11935355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 13272723 - 13272679
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| |||  |||||||||||| ||||||||    
T  13272723 atgaggtacttcaaagtatcctctctgccgaaattttgtctgaaa 13272679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 22950682 - 22950638
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  22950682 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 22950638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 22964656 - 22964612
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  22964656 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 22964612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 44002 - 43859
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||| | ||||||||||||||||||||||||| |||||    
T  44002 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtgccaaattaatttcattcaaaatattacaatgtt 43903  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  ||||||| |||  |||||| ||||||||||    
T  43902 tatttcaaatattacaatgtgttcacttatttaaaaagtttgta 43859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 372
Target Start/End: Original strand, 7826642 - 7826781
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| | |||    
T  7826642 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaacgtt 7826741  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtt 372  Q
    | ||||||||||  |||||||||||  |||||| ||||||    
T  7826742 tatttcaaatattacaatgtgatcacttatttaaaaagtt 7826781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 25214475 - 25214332
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || || |||| || |||||||| ||||||||||||||||||||||||| | |||    
T  25214475 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctgtttagaatgtttgtaccaaattaatttcattcaaaatattacaacgtt 25214376  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  25214375 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 25214332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 30330522 - 30330616
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattaca 328  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||||    
T  30330522 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattaca 30330616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 7779675 - 7779818
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| ||  |||||| || |||||||| ||||||||||||||||||||||||| |  ||    
T  7779675 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcatatttagaacgtttgtaccaaattaatttcattcaaaatattacaacatt 7779774  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||| ||  |||||| ||| ||||||    
T  7779775 tatttcaaatattacaatgtgaacacttatttaaaaaatttgta 7779818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 17973690 - 17973577
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  17973690 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 17973591  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  17973590 aagtggtcaaaatt 17973577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 30938407 - 30938294
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  30938407 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 30938308  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  30938307 aagtggtcaaaatt 30938294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 36578870 - 36578922
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  36578870 tgtcccttcggaaccaaatgaggtacttcaaagtaacctccctgccgaaattt 36578922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 36254923 - 36254984
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||| |||||| ||||||||    
T  36254923 tgtcccttcggaaccaaatgaggtactttaaagtaaccttcatgccaaaattttgtctgaaa 36254984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 25579752 - 25579865
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||| ||    
T  25579752 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagataa 25579851  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  25579852 aagtggtcaaaatt 25579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 26875994 - 26876107
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    |||||||||| || ||||||||||   || |||||||||||||||||||||| |  | | || | |  ||||||||||| |||||| ||| |||||||||    
T  26875994 aaatgaggtattttaaagtaacctctttgtcgaaatttcgtctgaaacgacaaaaatttccgacattaaaaatacgaataaaatgggtaagaatagagaa 26876093  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  26876094 aagtggtcaaaatt 26876107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 25700328 - 25700282
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||    
T  25700328 aaatgaggtacttcaaagtaacctcccttccgaaatttcgtttgaaa 25700282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 4839722 - 4839835
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||| |   || |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  4839722 aaatgaggtacttcaaagtaacttctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggtaagaatagagaa 4839821  T
Q  163 aagtggtcaaaatt 176  Q
    ||| ||||||||||    
T  4839822 aagcggtcaaaatt 4839835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 39837502 - 39837615
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  39837502 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 39837601  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  39837602 aagtggtcaaaatt 39837615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 39845545 - 39845658
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  39845545 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 39845644  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  39845645 aagtggtcaaaatt 39845658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 1407013 - 1407061
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacg 112  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||    
T  1407013 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacg 1407061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 14202422 - 14202360
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||||||||| || |||||    
T  14202422 gtcccttcggaatccgacatgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 14202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 14217062 - 14217000
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||||||||| || |||||    
T  14217062 gtcccttcggaatccgacatgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 14217000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 19368321 - 19368279
Alignment:
Q  71 gtacttcaaagtaaccttcctgccgaaatttcgtctgaaacga 113  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  19368321 gtacttcaaagtaacctacctgccgaaatttcttcagaaacga 19368279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 6585213 - 6585258
Alignment:
Q  65 aatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||| ||||||||||| |||| ||||||||||| |||||    
T  6585213 aatgaggtactccaaagtaacctccctgtcgaaatttcgtttgaaa 6585258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 26873544 - 26873657
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    |||| |||||||| ||||||||||   || |||||||||||||||||||||  |  | | || | |   |||||||||| |||||| ||| |||||||||    
T  26873544 aaataaggtactttaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaatttccgacattacaaatacgaataaaatgggtaagaatagagaa 26873643  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  26873644 aagtggtcaaaatt 26873657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 31210009 - 31210046
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  31210009 atgaggtacttcaaagtatcctccctgccgaaatttcg 31210046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 31003100 - 31003155
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||| |||||||    
T  31003100 gtcccttcggaatccgacatgaggtacttcaaagtatcctccctgccggaatttcg 31003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 47)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 37378391 - 37378534
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaag-aaaaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| || ||||||| || |||||||| ||||||||||||||||||||||||| | |||    
T  37378391 ccaagtctttggaatcaaatgttgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtaccaaattaatttcattcaaaatattacaacgtt 37378490  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  |||||||||||  |||||| ||||||||||    
T  37378491 tatttcaaatattacaatgtgatcacttatttaaaaagtttgta 37378534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 18133441 - 18133519
Alignment:
Q  196 caacaactgataacaatcacttgaactattttatttcttccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaa 274  Q
    |||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  18133441 caacaactaataacaatcactttaactattttatttctccccagtctttggaatcaattgtcgtgaagcaaagaaaaaa 18133519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 43521180 - 43521102
Alignment:
Q  196 caacaactgataacaatcacttgaactattttatttcttccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaa 274  Q
    |||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||    
T  43521180 caacaactaataacaatcactttaactattttatttctccccagtctttggaatcaattgtcgtgaagcaaagaaaaaa 43521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 23027993 - 23028053
Alignment:
Q  50 gtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  23027993 gtcccttcggaattaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaa 23028053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20372853 - 20372966
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  20372853 aaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatcggtaagaatagagaa 20372952  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  20372953 aagtggtcaaaatt 20372966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20398575 - 20398688
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  20398575 aaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatcggtaagaatagagaa 20398674  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  20398675 aagtggtcaaaatt 20398688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 24956786 - 24956899
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  24956786 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 24956885  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  24956886 aagtggtcaaaatt 24956899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 24965249 - 24965362
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  24965249 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 24965348  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  24965349 aagtggtcaaaatt 24965362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 23350016 - 23350129
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac-agatttattcggcttataaaatacgaattaaat-ggtaaaaatagaga 161  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| ||| ||| ||   || |||  ||||||||||| |||| ||||||||||||||    
T  23350016 aaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaaatgacgagaatt-cccgactttaaaaatacgaataaaatgggtaaaaatagaga 23350114  T
Q  162 aaagtggtcaaaatt 176  Q
    ||| |||||||||||    
T  23350115 aaaatggtcaaaatt 23350129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 26756699 - 26756746
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26756699 caaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaa 26756746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 27887224 - 27887263
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27887224 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaa 27887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 21852580 - 21852626
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||    
T  21852580 aaatgaggtacttcaaagtaacctccctgccgaaatttcgtttgaaa 21852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 21869104 - 21869150
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||    
T  21869104 aaatgaggtacttcaaagtaacctccctgccgaaatttcgtttgaaa 21869150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 23037969 - 23037923
Alignment:
Q  65 aatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaac 111  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  23037969 aatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaac 23037923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 31421914 - 31421801
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagagaa 162  Q
    |||||||||||||||||||||| |   || |||||||| ||||||||||||  |  | | || |||  ||||||||||| |||||| ||| |||||||||    
T  31421914 aaatgaggtacttcaaagtaacatctttgtcgaaattttgtctgaaacgacgaaaatttccgacttcaaaaatacgaataaaatgggtaagaatagagaa 31421815  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  31421814 aagtggtcaaaatt 31421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 21929361 - 21929311
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  21929361 caaatgaggtacttcaaagtaacctccctgcc-aaattttgtctgaaacgac 21929311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 20375834 - 20375797
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20375834 atgaggtacttcaaagtatccttcctgccgaaatttcg 20375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 20384625 - 20384588
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20384625 atgaggtacttcaaagtatccttcctgccgaaatttcg 20384588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 28844065 - 28843952
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  28844065 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 28843966  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  28843965 aagtggtcaaaatt 28843952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 28852675 - 28852562
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  28852675 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 28852576  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  28852575 aagtggtcaaaatt 28852562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 29186218 - 29186331
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||| |||||||||||||||   || |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| |||||  ||||||||    
T  29186218 aaatgaggcacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaaggatagagaa 29186317  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  29186318 aagtggtcaaaatt 29186331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 33846277 - 33846314
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33846277 atgaggtacttcaaagtatccttcctgccgaaatttcg 33846314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 43597986 - 43598099
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  43597986 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 43598085  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  43598086 aagtggtcaaaatt 43598099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 43603478 - 43603591
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  43603478 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 43603577  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  43603578 aagtggtcaaaatt 43603591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 43608970 - 43609083
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  43608970 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 43609069  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  43609070 aagtggtcaaaatt 43609083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 11804815 - 11804870
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  11804815 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 11804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 11814891 - 11814946
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  11814891 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 11814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 12182017 - 12182072
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  12182017 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 12182072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 21988620 - 21988664
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  21988620 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 21988664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 21997264 - 21997308
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  21997264 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 21997308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23606368 - 23606412
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  23606368 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 23606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 23635129 - 23635085
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  23635129 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 23635085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23829022 - 23829066
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  23829022 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 23829066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23837763 - 23837807
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  23837763 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 23837807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 3479244 - 3479306
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||||||||| || |||||    
T  3479244 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 3479306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 3494014 - 3494076
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||||||||| || |||||    
T  3494014 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 3494076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 17638365 - 17638318
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  17638365 caaatgaggtacttcaaagtaacctctctgtcgaaatttcgtttgaaa 17638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 27225614 - 27225668
Alignment:
Q  51 tcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  27225614 tcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 27225668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 27235085 - 27235139
Alignment:
Q  51 tcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  27235085 tcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 27235139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 33837701 - 33837736
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    |||||||||||||||||| |||||||||||||||||    
T  33837701 atgaggtacttcaaagtatccttcctgccgaaattt 33837736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 12172589 - 12172642
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  12172589 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaattt 12172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 1728099 - 1728212
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || | ||||||||||||||||| |  |  |   || |||  ||||||||||| |||| ||||| ||||||| |    
T  1728099 aaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagga 1728198  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  1728199 aagtggtcaaaatt 1728212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 26174865 - 26174828
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  26174865 atgaggtacttcaaagtatcctccctgccgaaatttcg 26174828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 26080829 - 26080873
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  26080829 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 26080873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 26090808 - 26090852
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  26090808 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 26090852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 27061859 - 27061804
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||| |||||||    
T  27061859 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccggaatttcg 27061804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 36456438 - 36456383
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||| ||||||||| ||| |||||||||||||||    
T  36456438 gtcccttcggaatctgacatgaggtatttcaaagtatcctccctgccgaaatttcg 36456383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 28662133 - 28661990
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||| | ||||||||||||||||||||||||| |||||    
T  28662133 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtgccaaattaatttcattcaaaatattacaatgtt 28662034  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  ||||||| |||  |||||| ||||||||||    
T  28662033 tatttcaaatattacaatgtgttcacttatttaaaaagtttgta 28661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 37820966 - 37820823
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| || |||||| | ||||||||||||||||||||||||| |||||    
T  37820966 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaacgtttgtgccaaattaatttcattcaaaatattacaatgtt 37820867  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  ||||||| |||  |||||| ||||||||||    
T  37820866 tatttcaaatattacaatgtgttcacttatttaaaaagtttgta 37820823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 41915243 - 41915100
Alignment:
Q  235 ccaagtctttggaatcaaatgtcgtgaaacaaagaa-aaaagagacagactatttaaaaagtttgtactaaattaatttcattcaaaatattac-atgtt 332  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||| ||  ||||||| ||||||||||||||||||||||||| |||||    
T  41915243 ccaagtctttggaatcaaatgtcgtgaaacaaagaaaaaaatagatagcctatttagaatatttgtaccaaattaatttcattcaaaatattacaatgtt 41915144  T
Q  333 tgtttcaaatatagcaatgtgatcatctatttagaaagtttgta 376  Q
    | ||||||||||  ||||||| |||  |||||| ||||||||||    
T  41915143 tatttcaaatattacaatgtgttcacttatttaaaaagtttgta 41915100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 14583050 - 14582937
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  14583050 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 14582951  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  14582950 aagtggtcaaaatt 14582937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 15944497 - 15944610
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  15944497 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 15944596  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  15944597 aagtggtcaaaatt 15944610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 15953012 - 15953125
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  15953012 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 15953111  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  15953112 aagtggtcaaaatt 15953125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 35138718 - 35138605
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  35138718 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 35138619  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  35138618 aagtggtcaaaatt 35138605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 35147054 - 35146941
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  35147054 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 35146955  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  35146954 aagtggtcaaaatt 35146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 38168297 - 38168410
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  38168297 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 38168396  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  38168397 aagtggtcaaaatt 38168410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 41233784 - 41233897
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  41233784 aaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 41233883  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  41233884 aagtggtcaaaatt 41233897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 35303871 - 35303812
Alignment:
Q  55 ttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||| |||||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  35303871 ttcggaaccaaatgaggtacttcaaattaacctctctgccgaaatttcgtctgaaacgac 35303812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 28479120 - 28479074
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28479120 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtttgaaa 28479074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20372254 - 20372366
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||||  || |||||||||||||||||||||  |  | | || |||  ||||||||||| |||| || ||  ||||||||    
T  20372254 aaatgaggtacttcaaagtaacctt-ttgtcgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggcaaggatagagaa 20372352  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  20372353 aagtggtcaaaatt 20372366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 42565869 - 42565982
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  42565869 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 42565968  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  42565969 aagtggtcaaaatt 42565982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 42574493 - 42574606
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  42574493 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 42574592  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  42574593 aagtggtcaaaatt 42574606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 2650822 - 2650767
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  2650822 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 2650767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 21110376 - 21110285
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaa 141  Q
    ||||||||||||||||||||||||| || ||| | ||||| |||  ||||||||||||||||  ||| | ||| ||||||  |||||||||||    
T  21110376 tgtcccttcggaatcaaatgaggtattttaaaat-acctttctgttgaaatttcgtctgaaatcacaaaattactcggctcttaaaatacgaa 21110285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 27683381 - 27683425
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  27683381 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 27683425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 42383840 - 42383785
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  42383840 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 42383785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 42398700 - 42398645
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  42398700 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 42398645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 33309131 - 33309185
Alignment:
Q  51 tcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||  | |||||||||||||||||| ||| |||||||||||||||    
T  33309131 tcccttcggaatctgacatgaggtacttcaaagtatcctccctgccgaaatttcg 33309185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 34434870 - 34434817
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaattt 101  Q
    ||||||||||||||  | |||||||||||||||||| ||| |||||||||||||    
T  34434870 gtcccttcggaatccgacatgaggtacttcaaagtatcctccctgccgaaattt 34434817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 35037981 - 35037931
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||| |||||||||||||  ||  |||||||||||||||||||||    
T  35037981 aaatgaggtatttcaaagtaacctctctatcgaaatttcgtctgaaacgac 35037931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 3757399 - 3757436
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3757399 atgaggtacttcaaagtatcctccctgccgaaatttcg 3757436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 3767465 - 3767502
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  3767465 atgaggtacttcaaagtatcctccctgccgaaatttcg 3767502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 10687444 - 10687481
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  10687444 atgaggtacttcaaagtatcctccctgccgaaatttcg 10687481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 11649095 - 11649132
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  11649095 atgaggtacttcaaagtatcctccctgccgaaatttcg 11649132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 16272531 - 16272494
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  16272531 atgaggtacttcaaagtatcctccctgccgaaatttcg 16272494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 16281690 - 16281653
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  16281690 atgaggtacttcaaagtatcctccctgccgaaatttcg 16281653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 25261728 - 25261691
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  25261728 atgaggtacttcaaagtatcctccctgccgaaatttcg 25261691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 28475803 - 28475840
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  28475803 atgaggtacttcaaagtatcctccctgccgaaatttcg 28475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 29853107 - 29853070
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  29853107 atgaggtacttcaaagtatcctccctgccgaaatttcg 29853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 30526870 - 30526907
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  30526870 atgaggtacttcaaagtatcctccctgccgaaatttcg 30526907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 21852449 - 21852504
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||| |||||||    
T  21852449 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccggaatttcg 21852504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 21860886 - 21860941
Alignment:
Q  50 gtcccttcggaatc--aaatgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    ||||||||||||||  | |||||||||||||||||| ||| ||||||| |||||||    
T  21860886 gtcccttcggaatctgacatgaggtacttcaaagtatcctccctgccggaatttcg 21860941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 31357113 - 31357157
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||| ||||    
T  31357113 atgaggtacttcaaagtatcctccctgccgaaattttgtcggaaa 31357157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 15938 - 15825
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||  |  | | || |||  ||||||||||| |||| |||||||||||||||    
T  15938 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaaaaatagagaa 15839  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  15838 aagtggtcaaaatt 15825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 17811 - 17938
Alignment:
Q  205 ataacaatcacttgaactattttatttcttccaa---gtctttggaatcaaatgtcgtgaaacaaaga-aaaaagagacagactatttaaaaagtttgta 300  Q
    |||||||||| |||||||||||||||||| ||||   ||||||||||  || |||||||||||| ||| ||||| ||| || ||||||| || |||||||    
T  17811 ataacaatcatttgaactattttatttctcccaattagtctttggaagtaagtgtcgtgaaacagagagaaaaatagatagcctatttagaaggtttgta 17910  T
Q  301 ctaaattaatttcattcaaaatattaca 328  Q
    | ||||||||||||||||||||||||||    
T  17911 ccaaattaatttcattcaaaatattaca 17938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 11128 - 11005
Alignment:
Q  55 ttcggaatcaaa-tgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaa 152  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||  |  | | || |||  | ||||||||| |||| |||||    
T  11128 ttcggaatcaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaacaatacgaataaaatgggtaa 11029  T
Q  153 aaatagagaaaagtggtcaaaatt 176  Q
     |||||||||||||||||||||||    
T  11028 gaatagagaaaagtggtcaaaatt 11005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 7130 - 7243
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||  |  |  |||||||  ||| ||| ||| |||| |||||||| ||||||    
T  7130 aaatgaggtacttcaaagtaaccttcctcccgaaatttcgtctgaaacaacgaaaattctcggctttaaaagtacaaataaaatgggtaaaaacagagaa 7229  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  7230 aagtggtcaaaatt 7243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 869 - 919
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  869 aaatgaggtatttcaaagtaacctttctgccgaaatttcgtctgaaacgac 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 35296 - 35409
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||    
T  35296 aaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaa 35395  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  35396 aagtggtcaaaatt 35409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 20414 - 20469
Alignment:
Q  56 tcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaac 111  Q
    |||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  20414 tcggaaccaaatgaggtactccaaagtaacctctctgccgaaatttcgtctgaaac 20469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 4515 - 4466
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacga 113  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  4515 aaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacga 4466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 33160 - 33047
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||| ||||||||||   ||||||||||||||||||||||||  |  |   || |||  |||||||| || |||| ||||| |||||||||    
T  33160 aaatgaggtactttaaagtaacctctttgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgtataaaatgggtaagaatagagaa 33061  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  33060 aagtggtcaaaatt 33047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 121345 - 121240
Alignment:
Q  72 tacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaaaagtggtc 170  Q
    ||||||||||||||||  || ||||||||||||||||||||||  |  |   || |||  ||||||||||| |||| ||||| |||||||||||||||||    
T  121345 tacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtc 121246  T
Q  171 aaaatt 176  Q
    ||||||    
T  121245 aaaatt 121240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 10596 - 10646
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||||||||||||||   ||||||||||||||||||| ||||    
T  10596 aaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaagcgac 10646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 61087 - 61041
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||    
T  61087 aaatgaggtacttcaaagtaaccttcttgccaaaatttcgtttgaaa 61041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 24 - 137
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaat-ggtaaaaatagagaa 162  Q
    ||||||||||||||||||||||||   |||| ||||||||||||||||| |  |  |  ||  |||  ||||||||||| |||| ||||| ||||||| |    
T  24 aaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaataaaatgggtaagaatagagga 123  T
Q  163 aagtggtcaaaatt 176  Q
    ||||||||||||||    
T  124 aagtggtcaaaatt 137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 6056 - 6100
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  6056 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 6100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 59789 - 59745
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||    
T  59789 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 59745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 81208 - 81164
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  81208 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 81164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0903 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3372 - 3314
Alignment:
Q  49 tgtcccttcggaatcaaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctg 107  Q
    |||| ||| ||||||| |||||||||| ||||||||||| ||| ||||||||| |||||    
T  3372 tgtctctttggaatcagatgaggtactgcaaagtaacctccctaccgaaattttgtctg 3314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 265 - 151
Alignment:
Q  63 caaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgacagatttattcggcttataaaatacgaattaaatgg-taaaaatagaga 161  Q
    |||||||||||||||||||||| ||    | |||||||||||||||||  ||  |  | |  |||||  ||||||||||| |||||| || |||||||||    
T  265 caaatgaggtacttcaaagtaaactcttcgtcgaaatttcgtctgaaataacgaaaatttctggctttaaaaatacgaataaaatgggtagaaatagaga 166  T
Q  162 aaagtggtcaaaatt 176  Q
    |||||||||||||||    
T  165 aaagtggtcaaaatt 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 15761 - 15811
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaacgac 114  Q
    ||||||||||||||||||||||||  || ||| ||||||||||||| ||||    
T  15761 aaatgaggtacttcaaagtaacctatctaccgtaatttcgtctgaagcgac 15811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 23590 - 23544
Alignment:
Q  64 aaatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||    
T  23590 aaatgaggtacttcaaagtaacctctctaccgaaatttcgtcagaaa 23544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 23521 - 23476
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  23521 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatt 23476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2036
Description:

Target: scaffold2036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 1113 - 1076
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  1113 atgaggtacttcaaagtatcctccctgccgaaatttcg 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 737 - 782
Alignment:
Q  65 aatgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    ||||||||||| ||||||||||| |||| ||||||||||| |||||    
T  737 aatgaggtactccaaagtaacctccctgtcgaaatttcgtttgaaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 39887 - 39850
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcg 103  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  39887 atgaggtacttcaaagtatcctccctgccgaaatttcg 39850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 40841 - 40886
Alignment:
Q  132 aaaatacgaattaaatgg-taaaaatagagaaaagtggtcaaaatt 176  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  40841 aaaatacgaataaaatggataagaatagagaaaagtggtcaaaatt 40886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0404 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0404
Description:

Target: scaffold0404; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 15456 - 15412
Alignment:
Q  66 atgaggtacttcaaagtaaccttcctgccgaaatttcgtctgaaa 110  Q
    |||||||||||||||||| ||| ||||||||||||| || |||||    
T  15456 atgaggtacttcaaagtatcctccctgccgaaattttgtttgaaa 15412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2518 times since January 2019
Visitors: 6164