View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0878_low_16 (Length: 375)

Name: NF0878_low_16
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0878_low_16
NF0878_low_16
[»] chr2 (6 HSPs)
chr2 (30-160)||(40084844-40084974)
chr2 (30-160)||(40058906-40059036)
chr2 (30-160)||(40076920-40077050)
chr2 (251-364)||(40077137-40077250)
chr2 (251-364)||(40059109-40059222)
chr2 (251-364)||(40085047-40085160)
[»] chr4 (2 HSPs)
chr4 (251-353)||(22016195-22016297)
chr4 (76-160)||(22016599-22016683)
[»] chr3 (2 HSPs)
chr3 (251-323)||(44352747-44352819)
chr3 (251-353)||(53322448-53322548)
[»] chr8 (1 HSPs)
chr8 (251-336)||(5450729-5450814)
[»] chr7 (1 HSPs)
chr7 (251-307)||(35052914-35052970)
[»] chr5 (1 HSPs)
chr5 (251-308)||(9642493-9642550)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 40084844 - 40084974
Alignment:
Q  30 ggttctgctttggttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084844 ggttctgctttggttcttaccaacaatgttttgcaccaatgtggattatgatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 40084943  T
Q  130 tctattcactaccctcgtagtactccacagg 160  Q
    |||||||||||||||||||||||||||||||    
T  40084944 tctattcactaccctcgtagtactccacagg 40084974  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 40058906 - 40059036
Alignment:
Q  30 ggttctgctttggttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 129  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058906 ggttctactttggttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 40059005  T
Q  130 tctattcactaccctcgtagtactccacagg 160  Q
    |||||||||||||||||||||||||||||||    
T  40059006 tctattcactaccctcgtagtactccacagg 40059036  T

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Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 40076920 - 40077050
Alignment:
Q  30 ggttctgctttggttcttaccaacaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 129  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076920 ggttctactttggttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggt 40077019  T
Q  130 tctattcactaccctcgtagtactccacagg 160  Q
    |||||||||||||||||||||||||||||||    
T  40077020 tctattcactaccctcgtagtactccacagg 40077050  T

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Target: chr2; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 251 - 364
Target Start/End: Original strand, 40077137 - 40077250
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 350  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077137 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 40077236  T
Q  351 tctctttgcttcat 364  Q
    ||||||||||||||    
T  40077237 tctctttgcttcat 40077250  T

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Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 251 - 364
Target Start/End: Original strand, 40059109 - 40059222
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 350  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059109 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 40059208  T
Q  351 tctctttgcttcat 364  Q
    ||||||||||||||    
T  40059209 tctctttgcttcat 40059222  T

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Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 251 - 364
Target Start/End: Original strand, 40085047 - 40085160
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 350  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085047 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 40085146  T
Q  351 tctctttgcttcat 364  Q
    ||||||||||||||    
T  40085147 tctctttgcttcat 40085160  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 22016297 - 22016195
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 350  Q
    |||||||||| ||||||||||| ||||| |||||||| ||| | ||||| ||||| || ||||||||||||||| | || || || |||  |||||||||    
T  22016297 agatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgagccggttcgaggccaggt 22016198  T
Q  351 tct 353  Q
    |||    
T  22016197 tct 22016195  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 22016683 - 22016599
Alignment:
Q  76 tatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacagg 160  Q
    ||||| ||||||||||||||||||||||||||||| || ||  | || |||||||| ||||| || |||||||| ||||| ||||    
T  22016683 tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcagg 22016599  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 44352819 - 44352747
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaa 323  Q
    |||||||||| |  |||||||||| | | ||||| || ||| |||||||||||||||||||||||||||||||    
T  44352819 agatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 353
Target Start/End: Original strand, 53322448 - 53322548
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt 350  Q
    ||||||||||| |||| |||||||||| || |||||||||| |  |||||||  ||| ||||| |||||||||||||||| |||| ||||||||  ||||    
T  53322448 agatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaa-ctatg-tttctggaacttacataaaccagttaaaggttaggt 53322545  T
Q  351 tct 353  Q
    |||    
T  53322546 tct 53322548  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 5450729 - 5450814
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacct 336  Q
    ||||||||||||| ||||| || ||  ||||||| |||||| | ||||| ||| |||||||||||||||||||   ||||||||||    
T  5450729 agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaacct 5450814  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 35052970 - 35052914
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaa 307  Q
    ||||||||||| ||||||||||||||| || ||||||||||||  ||||||| ||||    
T  35052970 agatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcatcgaaa 35052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 9642493 - 9642550
Alignment:
Q  251 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaac 308  Q
    |||||||||| ||||||||||||||  | |||||||| || ||||||| |||||||||    
T  9642493 agatgtggcctgaccttattcaaaaggccaaagatggtggcctagatgccattgaaac 9642550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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