View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_18 (Length: 365)
Name: NF0878_low_18
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 44882699 - 44883024
Alignment:
| Q |
30 |
ttagtttttcagaaggaagatctcaatctgatatataattaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgacacaatgttc |
129 |
Q |
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| T |
44882699 |
ttagtttttcagaaggaagatctcaatctgatatataattaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgacacaatgttc |
44882798 |
T |
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| Q |
130 |
tccgagtcgaattatactcgctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcag |
229 |
Q |
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| T |
44882799 |
tccaagtcgaattatacttgctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctacagcag |
44882898 |
T |
|
| Q |
230 |
gtgctggggtcatggattggtactgaggaggtgcatttgcatttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctccgcctccaccata |
329 |
Q |
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| T |
44882899 |
gtgctggggtcatggattggtactgaggaggtgcatttgcatttgcgggctgctgttgtgtgtagtatacttgttcttgcgtagctccacctccaccata |
44882998 |
T |
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| Q |
330 |
ttcataaccataaatagtcttctgtg |
355 |
Q |
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| T |
44882999 |
ttcataaccataaatagtcttctgtg |
44883024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 317
Target Start/End: Complemental strand, 9019927 - 9019690
Alignment:
| Q |
71 |
atcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgacacaatgttctccgagtcgaattatactcgctgtgaagttctgttttgctg |
170 |
Q |
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| T |
9019927 |
atcactaaagagtgaacaggaagtctaataaaccctcaatatcatgcgacaaatatttctccgaatcaaattatgcttccttagaaatgttgtttggctg |
9019828 |
T |
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| Q |
171 |
ctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggtcatggattggtactgaggaggtgcatttgca |
270 |
Q |
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| T |
9019827 |
ctgaa---tattgtccatgggaaattgttttgaagcatctgtcattgttgaagcagcaactgcagtggtcatagattggtactaaggaggtgcatttgca |
9019731 |
T |
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| Q |
271 |
tttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctcc |
317 |
Q |
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| T |
9019730 |
t------gctgctgttgtgggtagaatacttgttcttgcttagctcc |
9019690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 8978469 - 8978382
Alignment:
| Q |
181 |
ttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggtcatggattggtactgaggaggtgcatttg |
268 |
Q |
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| T |
8978469 |
ttgtatataggaaattgttttgaaaaatcggacattgttgcagcagcgactgctgtggtcatggattggtactgagaaggtgcatttg |
8978382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 9007545 - 9007491
Alignment:
| Q |
67 |
attaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca |
121 |
Q |
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| T |
9007545 |
attaatcactaaaaaattaacaagcagtccaaccaaccctcaatatcatgcgaca |
9007491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 9029442 - 9029388
Alignment:
| Q |
67 |
attaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca |
121 |
Q |
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||||||||||||| | |||||| ||| |||| ||||||||||||||||||||||| |
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| T |
9029442 |
attaatcactaaaaagtgaacaagaattccattcaaccctcaatatcatgcgaca |
9029388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 1253553 - 1253590
Alignment:
| Q |
278 |
gctgctgttgtgtgtagtatacttgttcttgcgtagct |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
1253553 |
gctgcttttgtgtgtagtatacttgttcttgcgtagct |
1253590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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