View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_19 (Length: 358)
Name: NF0878_low_19
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 35312979 - 35312739
Alignment:
| Q |
30 |
cgtgcatccaaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacactgtttcttcacttgctc |
129 |
Q |
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| T |
35312979 |
cgtgcatccaaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacactgtttcttcacttgctc |
35312880 |
T |
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| Q |
130 |
tgtctaaagatggaaagtttttgtactctgtttcatgggacagaacaatcaaaatctggagaactaaagatttcacttgtttggaatcaataaccaacgc |
229 |
Q |
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| T |
35312879 |
tgtctaaagatggaaagtttttgtactctgtttcatgggacagaacaatcaaaatctggagaactaaagatttcacttgtttggaatcaataaccaacgc |
35312780 |
T |
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| Q |
230 |
acacgatgatgctataaacgcggttgttgtttctgatgatg |
270 |
Q |
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| T |
35312779 |
acacgatgatgctataaacgcggttgttgtttcttatgatg |
35312739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 44167097 - 44166886
Alignment:
| Q |
39 |
aaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacactgtttcttcacttgctctgtctaaag |
138 |
Q |
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| T |
44167097 |
aaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacacagtctcatctcttgccttatctaaag |
44166998 |
T |
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| Q |
139 |
atggaaagtttttgtactctgtttcatgggacagaacaatcaaaatctggagaactaaagatttcacttgtttggaatcaataaccaacgcacacgatga |
238 |
Q |
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| T |
44166997 |
atggaaccttattgtattctgtttcatgggacagaacaatcaaagtgtggaaaaccaaagacttgacatgtttggaatcattgcaaaacgcacacgacga |
44166898 |
T |
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| Q |
239 |
tgctataaacgc |
250 |
Q |
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| T |
44166897 |
tgcaataaacgc |
44166886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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