View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0878_low_2 (Length: 576)
Name: NF0878_low_2
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 124 - 548
Target Start/End: Complemental strand, 26357967 - 26357533
Alignment:
| Q |
124 |
actatatttcagttatgttagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357967 |
actatatttcagttatgttagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtt |
26357868 |
T |
|
| Q |
224 |
tctggcatatatttgaaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgtt----------gtaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26357867 |
tctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttgtaca |
26357768 |
T |
|
| Q |
314 |
accaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
26357767 |
accaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcatcagt |
26357668 |
T |
|
| Q |
414 |
gcttagttcttactcttggttatgtataattgttgctcaatttttgttccctgctcaacttaatcgtactatatcactcgctatgcataactgttgctct |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26357667 |
tcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgctct |
26357568 |
T |
|
| Q |
514 |
ctgtttatttacacaagccatttttctgtcttttt |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
26357567 |
ctgtttatttacacaagccatttttctgtcttttt |
26357533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 26356882 - 26356821
Alignment:
| Q |
135 |
gttatgttagaacctattttgctgcttgatctttatctctagaatctttatgataacattgt |
196 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||| |||| | || ||||||||||||||||| |
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|
| T |
26356882 |
gttatgctagaacctattttcctgtttgatcttaatctggaaaagctttatgataacattgt |
26356821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 142 - 470
Target Start/End: Complemental strand, 51759767 - 51759446
Alignment:
| Q |
142 |
tagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaa |
241 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| || ||| || | ||||||||||| |||||||||| | |||||||||||||| ||||||| ||| |
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|
| T |
51759767 |
tagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacttcggagttgtttctggtatatattcaaaa |
51759668 |
T |
|
| Q |
242 |
ttgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtat |
341 |
Q |
| |
|
||||||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
51759667 |
ttgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtat |
51759568 |
T |
|
| Q |
342 |
aacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgtata |
441 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
51759567 |
aacagttggatgctgcccttttgatttagagtgttagtaatagcttgttgaatctttagatactgcatc-------agttcttactcttggttatgtata |
51759475 |
T |
|
| Q |
442 |
attgttgctcaatttttgttccctgctca |
470 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| |
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|
| T |
51759474 |
attgttgcttaatttatgttcccagctca |
51759446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 6e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 142 - 473
Target Start/End: Complemental strand, 6685167 - 6684843
Alignment:
| Q |
142 |
tagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaa |
241 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||||| | ||| ||||| ||||||||||| |||||||||| |||||||||||| ||||||||||| ||| |
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|
| T |
6685167 |
tagaaccaattttgctggttgattttgatctctaagagcttcatgatgacattgtgaagtatggattaacttgggagttgtttttggcatatattcaaaa |
6685068 |
T |
|
| Q |
242 |
ttgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtat |
341 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||| |
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|
| T |
6685067 |
ttgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatattagtat |
6684968 |
T |
|
| Q |
342 |
aacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgtata |
441 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
6684967 |
aacagttggatgctgcccttttgatttagagtgttaggtatagcttgttgaatctttaggtactgcatc-------agttcttactcttggttatgtata |
6684875 |
T |
|
| Q |
442 |
attgttgctcaatttttgttccctgctcaact |
473 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| |
|
|
| T |
6684874 |
attgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 215 - 463
Target Start/End: Complemental strand, 30822069 - 30821828
Alignment:
| Q |
215 |
ggagttgtttctggcatatatttgaaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaa |
314 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
30822069 |
ggagttttttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaa |
30821970 |
T |
|
| Q |
315 |
ccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtg |
414 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| |
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|
| T |
30821969 |
ccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatc---- |
30821874 |
T |
|
| Q |
415 |
cttagttcttactcttggttatgtataattgttgctcaatttttgttcc |
463 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
30821873 |
---agttcttactcttggttatttataattgttgcttaatttctgttcc |
30821828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 226 - 473
Target Start/End: Complemental strand, 30812796 - 30812556
Alignment:
| Q |
226 |
tggcatatatttgaaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttga |
325 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| |
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|
| T |
30812796 |
tggcatttattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttga |
30812697 |
T |
|
| Q |
326 |
tttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttctta |
425 |
Q |
| |
|
|||| |||||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
30812696 |
tttgaaatgttagtataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatc-------agttctta |
30812604 |
T |
|
| Q |
426 |
ctcttggttatgtataattgttgctcaatttttgttccctgctcaact |
473 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
30812603 |
ctcttggttatttataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 34753876 - 34753767
Alignment:
| Q |
10 |
tgtaaatctcaattttttgtaaaacttgaaatcctaaaacacagtttaagatcatttggtgagacaaataaatatataaacagacccaaaacacaaaaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34753876 |
tgtaaatctcaattttttgtaaaacttgaaatcctaaaacacagtt-aagatcatttggtgagacaaataaatatataaacagacccaaaacacaaaaca |
34753778 |
T |
|
| Q |
110 |
ggacgctagaa |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
34753777 |
ggacgctagaa |
34753767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 270 - 473
Target Start/End: Complemental strand, 12592717 - 12592521
Alignment:
| Q |
270 |
atttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttg |
369 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |
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|
| T |
12592717 |
atttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattta |
12592618 |
T |
|
| Q |
370 |
gagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgtataattgttgctcaatttttgttccctgctc |
469 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||| ||||| ||||||| |||| |
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|
| T |
12592617 |
gtttgttagtaatagcttattgaatctttaggtactacatc-------aattctttctcttggttatgtataattattgcttaatttctgttcccagctc |
12592525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 194 - 473
Target Start/End: Complemental strand, 27810826 - 27810568
Alignment:
| Q |
194 |
tgtgaaggatggattaacctgggagttgtttctggcatatatttgaaattgtcttctcaatccatccaacaccgtgatttggatattacta--gcttaca |
291 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||| |||||| ||||||| |||||| ||||| ||||| || ||||||||||||||| ||||||| |
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|
| T |
27810826 |
tgtgaagtatggattaacttgggagttttttctggcttatattcaaaattgtattctcagtccattcaacatagttatttggatattactatagcttaca |
27810727 |
T |
|
| Q |
292 |
tgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttg |
391 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||| |||||| || |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27810726 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgtta----------------ctgcccttttgatttagagtgttagtaatagcttgttg |
27810643 |
T |
|
| Q |
392 |
aatctttaggtattgcatcagtgcttagttcttactcttggttatgtataattgttgctcaatttttgttccctgctcaact |
473 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
27810642 |
aatctttaggtactgcatc-------agttcttactcttggttatttataattgttgcttaatttctgttcccatctcaact |
27810568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 473
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
422 |
cttactcttggttatgtataattgttgctcaatttttgttccctgctcaact |
473 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||| |||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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