View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_20 (Length: 339)
Name: NF0878_low_20
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 53295750 - 53295446
Alignment:
| Q |
37 |
ctttcatgtcaaaaagttttagatcatgtaacgttgattttgttgnnnnnnngaagttaaaaacacaagcctggacacatgctcatg-----------gt |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
53295750 |
ctttcatgtcaaaaagttttagatcatgtaacgttgattttgttgagaaaaaaaagttaaaaacacaagcctggacacatgctcatgtctagctcatggt |
53295651 |
T |
|
| Q |
126 |
aattacttggaa--gtctagtcacgtaacgttcatgataaaaatacctagctctattctttatattgacgtatcactcattcaaaaaacattgaggtaag |
223 |
Q |
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|||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53295650 |
aattacttggaactgtctagtcacataatgttcatgataaaaatacctagctctattctttatattgacgtatcactcattcaaaaaacattgaggtaag |
53295551 |
T |
|
| Q |
224 |
tatcacttaagctgataaaaagtcaactttttcttaaaagcaatacgtgagcgtcaccttctaatgaggctcaattaattcttgtaaccaagccgtcgtt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53295550 |
tatcacttaagctgataaaaagtcaactttttcttaaaagcaatacgtgagcgtcaccttctaatgaggctcaattaattcttgtaaccaagccgtcgtt |
53295451 |
T |
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| Q |
324 |
ttcat |
328 |
Q |
| |
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||||| |
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| T |
53295450 |
ttcat |
53295446 |
T |
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