View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_22 (Length: 325)
Name: NF0878_low_22
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 316
Target Start/End: Original strand, 28205842 - 28206120
Alignment:
| Q |
38 |
aagagaagtacacttccaaatcccaaatcaatatcaccggatcaactcaagtgggttcgtataaacttatcttataaccgtattttaaaagtaattgtaa |
137 |
Q |
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|||| ||| |||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
28205842 |
aagaaaagcacacttccaaattccaaatcaatatcatcgggtcaacttaagtgggttcgtataaacttatcttataaccgtattttagaagtaatcgtaa |
28205941 |
T |
|
| Q |
138 |
aatattgaatttttatttttgatgttagtgtaaactagtttatataccattttcttcttaacaaatttgatgattacattggaaaactaattcaaagttt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28205942 |
aatattgaatttttatttttgatgttagtgtaaactagtttatataccattttcttcttaacaaatttgatgattacattggaaaactaatagaaagttt |
28206041 |
T |
|
| Q |
238 |
ttgatgaagttccttacctgtaattcagagacatttgcacttgcaagagctaatcttaatttatacagtccatattctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28206042 |
ttgatgaagttccttacctgtaattcagagacatttgcacttgcaagagctaatcttaatttatacagtccattttctt |
28206120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 46174421 - 46174460
Alignment:
| Q |
55 |
aaatcccaaatcaatatcaccggatcaactcaagtgggtt |
94 |
Q |
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|||||||||||||||||||||||| |||| |||||||||| |
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| T |
46174421 |
aaatcccaaatcaatatcaccggaccaacccaagtgggtt |
46174460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 12633066 - 12633009
Alignment:
| Q |
37 |
gaagagaagtacacttccaaatcccaaatcaatatcaccggatcaactcaagtgggtt |
94 |
Q |
| |
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|||||| || ||||| ||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
12633066 |
gaagaggagcacactcccaaatcccaagtcaatatcaccgggacaacccaagtgggtt |
12633009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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