View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_26 (Length: 284)
Name: NF0878_low_26
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2588733 - 2588499
Alignment:
| Q |
1 |
atggtcttggtaatgtggatcaatgcatatcgaagtctcgtgatgagaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588733 |
atggtcttggtaatgtggatcaatgcatattgaagtctcgtgatgagaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacat |
2588634 |
T |
|
| Q |
101 |
gatgataaaggttttcctagattgtgctcatcacattccacatcataatcatctgtttccacagacgcataactgctttcaccaacacaagaagaattta |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2588633 |
gatgataaaggtttttctagattgtgctcatcacattccacatcataatcatctgtttccacagacgcataactgctttcaccaacacaagaagatttta |
2588534 |
T |
|
| Q |
201 |
agaatgattcaggatacatttctcttgccaatctt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
2588533 |
agaatgattcaggatacatttctcttgccaatctt |
2588499 |
T |
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