View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0878_low_27 (Length: 282)

Name: NF0878_low_27
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0878_low_27
NF0878_low_27
[»] chr1 (3 HSPs)
chr1 (197-253)||(7220752-7220808)
chr1 (203-253)||(14240278-14240330)
chr1 (207-253)||(33713269-33713317)
[»] chr6 (3 HSPs)
chr6 (204-253)||(10504168-10504219)
chr6 (204-233)||(32759004-32759033)
chr6 (204-253)||(9386649-9386700)
[»] chr7 (4 HSPs)
chr7 (208-253)||(4901416-4901463)
chr7 (205-253)||(20175129-20175179)
chr7 (204-234)||(24752189-24752219)
chr7 (204-253)||(5102091-5102142)
[»] chr5 (1 HSPs)
chr5 (204-253)||(26308180-26308231)
[»] chr4 (4 HSPs)
chr4 (204-253)||(10107613-10107664)
chr4 (208-253)||(15049545-15049592)
chr4 (208-253)||(15104832-15104879)
chr4 (200-253)||(19901156-19901211)
[»] chr2 (1 HSPs)
chr2 (204-253)||(30694936-30694987)
[»] chr8 (1 HSPs)
chr8 (205-253)||(24119220-24119270)
[»] scaffold0394 (1 HSPs)
scaffold0394 (208-253)||(11136-11183)
[»] chr3 (1 HSPs)
chr3 (204-253)||(26091885-26091936)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 7220752 - 7220808
Alignment:
Q  197 ccattgcctattgaatcttagaaggacatcaacacactccctctcggtagttctaca 253  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7220752 ccatcgcctattgaatcttagaaggacatcaacacactccctctcggtagttctaca 7220808  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 14240330 - 14240278
Alignment:
Q  203 cctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    ||||||||||||||||||||||||| ||||  ||||||| |||||||| ||||    
T  14240330 cctattgaatcttagaaggacatcagcacattctccctcacggtagttataca 14240278  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 33713269 - 33713317
Alignment:
Q  207 ttgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    |||||||||||||||||||||||| |  || ||||||||||||||||||    
T  33713269 ttgaatcttagaaggacatcaacatattcttcctctcggtagttctaca 33713317  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 10504168 - 10504219
Alignment:
Q  204 ctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  10504168 ctattgaatcttagaaagacatcaacacactctccctctcggtagttctaca 10504219  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 32759004 - 32759033
Alignment:
Q  204 ctattgaatcttagaaggacatcaacacac 233  Q
    ||||||||||||||||||||||||||||||    
T  32759004 ctattgaatcttagaaggacatcaacacac 32759033  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 9386649 - 9386700
Alignment:
Q  204 ctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    |||||||||||| |||||||||||||| |  |||||||||| ||||||||||    
T  9386649 ctattgaatctttgaaggacatcaacatattctccctctcgatagttctaca 9386700  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 4901463 - 4901416
Alignment:
Q  208 tgaatcttagaaggacatcaac--acactccctctcggtagttctaca 253  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  4901463 tgaatcttagaaggacatcaacaaactctccctctcggtagttctaca 4901416  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 20175129 - 20175179
Alignment:
Q  205 tattgaatcttagaaggacatcaacacac--tccctctcggtagttctaca 253  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||||    
T  20175129 tattgaatcttagaaggacattcacacactttccctctcggtagttctaca 20175179  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 24752219 - 24752189
Alignment:
Q  204 ctattgaatcttagaaggacatcaacacact 234  Q
    |||||||||||||||||||||||||||||||    
T  24752219 ctattgaatcttagaaggacatcaacacact 24752189  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 5102142 - 5102091
Alignment:
Q  204 ctattgaatcttagaaggacatca--acacactccctctcggtagttctaca 253  Q
    ||||| ||||||||||||||||||  |||| ||||||||| |||||||||||    
T  5102142 ctattaaatcttagaaggacatcagcacactctccctctcagtagttctaca 5102091  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 26308180 - 26308231
Alignment:
Q  204 ctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    |||||||||||||||||||||||||||||  |||| ||| ||||||||||||    
T  26308180 ctattgaatcttagaaggacatcaacacactctccttcttggtagttctaca 26308231  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 10107613 - 10107664
Alignment:
Q  204 ctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    ||||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  10107613 ctattgaatcttagaaggacatcaacatattctccctctcagtagttctaca 10107664  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 15049592 - 15049545
Alignment:
Q  208 tgaatcttagaaggacatcaacacac--tccctctcggtagttctaca 253  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  15049592 tgaatcttagaaggatatcaacacactttccctctcggtagttctaca 15049545  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 15104832 - 15104879
Alignment:
Q  208 tgaatcttagaaggacatcaacacac--tccctctcggtagttctaca 253  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  15104832 tgaatcttagaaggatatcaacacactttccctctcggtagttctaca 15104879  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 19901156 - 19901211
Alignment:
Q  200 ttgcctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    ||||||||| ||||||||||||| |||| ||||  |||||||||||||||||||||    
T  19901156 ttgcctatttaatcttagaaggagatcagcacaatctccctctcggtagttctaca 19901211  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 30694987 - 30694936
Alignment:
Q  204 ctattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||| ||||    
T  30694987 ctattgaatcttagaaggacatcaacatattctccctctcggtagttataca 30694936  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 24119270 - 24119220
Alignment:
Q  205 tattgaatcttagaaggacatcaacaca--ctccctctcggtagttctaca 253  Q
    ||||||||||||||||||||||||||||  |||||||||  ||||||||||    
T  24119270 tattgaatcttagaaggacatcaacacactctccctctctatagttctaca 24119220  T

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Target: scaffold0394 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 11183 - 11136
Alignment:
Q  208 tgaatcttagaaggacatcaacacac--tccctctcggtagttctaca 253  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||||    
T  11183 tgaatcttagaaggatatcaacacactttccctctcgatagttctaca 11136  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 26091885 - 26091936
Alignment:
Q  204 ctattgaatcttagaaggacatcaac--acactccctctcggtagttctaca 253  Q
    |||||||||||||||| |||||||||  |  |||||||||||||||||||||    
T  26091885 ctattgaatcttagaacgacatcaacttattctccctctcggtagttctaca 26091936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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