View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_29 (Length: 276)
Name: NF0878_low_29
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 589440 - 589613
Alignment:
| Q |
30 |
ataaacccatggtgactttgtccctcctggttctcaacttgggcttctgttaattgagccatttgggtttgattaccattttgagtattaggaacttgtg |
129 |
Q |
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| T |
589440 |
ataaacccatggtgactttgtccctcctggttctcaacttgggcttctgttaattgagccatttgggtttgattaccattttgagcattaggaacttgtg |
589539 |
T |
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| Q |
130 |
tcatacctctagtttcttccaacatcctaaaataagcataaggaccccaacctgcagagaataacaatatatta |
203 |
Q |
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| T |
589540 |
tcatacctctagtttcttccaacatcctaaaataagcataaggaccccaacctgcagagaataacaatatatta |
589613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 589650 - 589710
Alignment:
| Q |
216 |
cataacagaattaaattcatcaacttggtcatttttcacaggaaattagtttaattaagtc |
276 |
Q |
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| T |
589650 |
cataacagaattaaattcatcaacttggtaatttttcacaggaaattagtttaattaagtc |
589710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 31701003 - 31700824
Alignment:
| Q |
34 |
acccatggtgactttgtccctcctggttctcaacttgggcttctgttaattgagccatttgggtttgattaccattttgagtattaggaacttgtgtcat |
133 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| | ||||||||||||||||| ||||||| |||||||||| |
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| T |
31701003 |
acccatggtgactttgtccctcctggttctcaacttgagcttctgttaattgggccaattgtgcttgattaccattttgagcattaggagcttgtgtcat |
31700904 |
T |
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| Q |
134 |
acctctagtttcttccaacatcctaaaataagcataaggaccccaacctgcagagaataacaatatattatctacaacat |
213 |
Q |
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| T |
31700903 |
acctctagtttcttccaacgtcctgaaataagcataaggaccccaacctgcagagaataacaatatattatctacaacat |
31700824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 31700794 - 31700748
Alignment:
| Q |
216 |
cataacagaattaaattcatcaacttggtcatttttcacaggaaatt |
262 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
31700794 |
cataacagaattaaattcatcaacttggtctttttttacaggaaatt |
31700748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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