View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_31 (Length: 265)
Name: NF0878_low_31
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 293110 - 292938
Alignment:
| Q |
66 |
ccaaattcttgatagtgaatctggtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctgctgcttca |
165 |
Q |
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| T |
293110 |
ccaaattcttgatagtgaatctggtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctgctgcttca |
293011 |
T |
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| Q |
166 |
gctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagcttaagta |
238 |
Q |
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| T |
293010 |
gctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagcttaagta |
292938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 27493600 - 27493768
Alignment:
| Q |
65 |
tccaaattcttgatagtgaatctggtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctgctgcttc |
164 |
Q |
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| T |
27493600 |
tccaaatccttgatagtgattctggtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctgctgcttc |
27493699 |
T |
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| Q |
165 |
agctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagctt |
233 |
Q |
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| T |
27493700 |
tgctttgaggcatccttattttcttcttggtggtgatcaggcagctgcagttctttctaaattcagctt |
27493768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 27500258 - 27500426
Alignment:
| Q |
65 |
tccaaattcttgatagtgaatctggtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctgctgcttc |
164 |
Q |
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| T |
27500258 |
tccaaatccttgatagtgattctggtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctgctgcttc |
27500357 |
T |
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| Q |
165 |
agctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagctt |
233 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| |
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| T |
27500358 |
tgctttgaggcatccttattttcttcttggtggtgatcaggcagctgcagttctttctaaattcagctt |
27500426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 27515050 - 27515218
Alignment:
| Q |
65 |
tccaaattcttgatagtgaatctggtagaggttgggacttggcaacaaagcttatatctgaaagaggtcccgtaagaagaggacgtttatctgctgcttc |
164 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||| || ||||| || ||| ||||||| | ||||||||||||||||| |
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| T |
27515050 |
tccaaatccttgatagtgattctggtagaggttgggacttagcatcaaagcttatctccaaaagaagttccgaaagaagaaggcgtttatctgctgcttc |
27515149 |
T |
|
| Q |
165 |
agctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagctt |
233 |
Q |
| |
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|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| |
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| T |
27515150 |
tgctttgaggcatccttattttcttcttggtggtgatcaggcagctgcagttctttctaaattcagctt |
27515218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27496232 - 27496299
Alignment:
| Q |
166 |
gctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagctt |
233 |
Q |
| |
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||||||| ||||| || |||||||| || |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
27496232 |
gctttgaagcatccatactttcttcttggtggtgatcaggcagccgcagttctttctaaattcagctt |
27496299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27502890 - 27502957
Alignment:
| Q |
166 |
gctttgagacatccttattttcttctaggaggtgatcaggcagctgcagttctttcaaaattaagctt |
233 |
Q |
| |
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||||||| ||||| || |||||||| || |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
27502890 |
gctttgaagcatccatactttcttcttggtggtgatcaggcagccgcagttctttctaaattcagctt |
27502957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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