View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_32 (Length: 265)
Name: NF0878_low_32
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_32 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 50307200 - 50307441
Alignment:
| Q |
21 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaa |
120 |
Q |
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| T |
50307200 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaa |
50307296 |
T |
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| Q |
121 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
220 |
Q |
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| T |
50307297 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
50307396 |
T |
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| Q |
221 |
tgatcaagttgaaagtgtacatgagattaatcaatctcatgatca |
265 |
Q |
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| T |
50307397 |
tgatcaagttgaaagtgtgcatgagattaatcaacctcatgatca |
50307441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 50307605 - 50307678
Alignment:
| Q |
183 |
gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatc |
256 |
Q |
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| T |
50307605 |
gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaatc |
50307678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 50307688 - 50307768
Alignment:
| Q |
185 |
tggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatctcatgatca |
265 |
Q |
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| T |
50307688 |
tggggaagtagaaaaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatcgcacgatca |
50307768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 50307448 - 50307516
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatc |
256 |
Q |
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| T |
50307448 |
ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatc |
50307516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 50307529 - 50307603
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtacatgagattaatcaatctcatga |
262 |
Q |
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| T |
50307529 |
ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaatcacatga |
50307603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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