View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_4 (Length: 548)
Name: NF0878_low_4
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 192 - 521
Target Start/End: Original strand, 3543575 - 3543901
Alignment:
| Q |
192 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttgagaagtgtctagtcttgttttaatcta |
291 |
Q |
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| T |
3543575 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttgagaagtgtctagtcttgttttaatcta |
3543674 |
T |
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| Q |
292 |
aaatttgataacaatcaatgacattgaacatattttatgcacgcatgcagtcatatttttgtatctaaccacacttgtagaaacatctactaaggtaaaa |
391 |
Q |
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| T |
3543675 |
aaatttgataacaatcaatgacattgagcatattttatgcacgcatgcaatcatatttttgtatctaccctcacttgtagaaacatctactaaggtaaaa |
3543774 |
T |
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| Q |
392 |
tatatggtgtcaatatgattacattctgtttaattaannnnnnnnacattgttagtgcaatttgtgaagaatcatgggatgagagggtcgaaggttatac |
491 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543775 |
tatatggtgtcaatttgatt---ttctgtttaattaattttttttacattgttagtgcaatttgtgaagaatcatgggatgagagggtcgaaggttatac |
3543871 |
T |
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| Q |
492 |
ccataagatgaataaagatagtaaattgtg |
521 |
Q |
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| T |
3543872 |
ccataagatggataaagatagcaaattgtg |
3543901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 3543357 - 3543536
Alignment:
| Q |
13 |
aatatcaccaaaaagccaaaatatattaatttcatattactaacttttatttgaaattttctatgcttcttaatccattgttccatgta--acacactac |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
3543357 |
aatatcaccaaaaagccaaaacatattaatttcatattactaacttttatttgaactttcctatgcttcttaatccattgttccatgtaacacacactac |
3543456 |
T |
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| Q |
111 |
actacctttataagtagacaagagatttcattaaatttgaaaactttggtacattctaggtaggtcaagaacaaaggaga |
190 |
Q |
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| T |
3543457 |
actacctttataagtagacaagagatttcattaaatttgaaaagtttggtacattctaggtaggtcaagagcaaaggaga |
3543536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 3530364 - 3530437
Alignment:
| Q |
192 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttga |
265 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||||||| |
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| T |
3530364 |
aagtaatgttgttgattcagaggggtgatgaaaagttggagctgcctgtggtacttgaagaacagagttcttga |
3530437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 3530251 - 3530325
Alignment:
| Q |
116 |
ctttataagtagacaagagatttcattaaatttgaaaactttggtacattctaggtaggtcaagaacaaaggaga |
190 |
Q |
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||||||| ||||||||| ||||| | | |||||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
3530251 |
ctttatatgtagacaagtgattttaattaatttgaaaattttggtacattcttggtaggtcaagagcaaaggaga |
3530325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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