View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_40 (Length: 251)
Name: NF0878_low_40
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_40 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 3684033 - 3684255
Alignment:
| Q |
30 |
attagatgggtgattattaattactcatcattcatttcctttctttacaagcttatgtaataacttttattgaaatagaaggttaatttttattcagttg |
129 |
Q |
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| T |
3684033 |
attagatgggtgattattaattactcatcattcatttcctttctttacaagcttatgtaataacttttattgaaatagaaggttgatttttattcagttg |
3684132 |
T |
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| Q |
130 |
tgaaatgaatcaa-ttagttgtctttttatctgataataatgaaaggttgttctataggtcccgcaggatgctcacttccctctcgagtcctaactcttg |
228 |
Q |
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| T |
3684133 |
tgaaatgaatcaatttagttgtctttttatctaataataatgaaaggttgttctataggtccctcaagatgctcacttccctctcgagtcctgactcttg |
3684232 |
T |
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| Q |
229 |
atccctcaagttcagtagtttaa |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
3684233 |
atccctcaagttcagtagtttaa |
3684255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 3702803 - 3702950
Alignment:
| Q |
33 |
agatgggtgatta-ttaattactcatcattcatttcctttctttacaagcttatgtaataacttttatt-gaaatagaaggttaatttttattcagttgt |
130 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||| ||| | ||||||||||| ||||||| |||||| || ||| ||||||| ||| |||| |
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| T |
3702803 |
agatgggtgattaattaatttctcatcattcattttctttctcaacatgtttatgtaataatttttatttgaaataaaaagttgatttttagtcaattgt |
3702902 |
T |
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| Q |
131 |
gaaatgaatcaattagttgtctttttatctgataataatgaaaggttg |
178 |
Q |
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| T |
3702903 |
gaaatgaatcagttagttgtttttttatctaataataatgaaaggttg |
3702950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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