View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_41 (Length: 251)
Name: NF0878_low_41
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 2589099 - 2588864
Alignment:
| Q |
16 |
attacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatgacaaatgtagatatagactaa |
115 |
Q |
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| T |
2589099 |
attacatttttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatggcaaatgtagatatggactaa |
2589000 |
T |
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| Q |
116 |
agattcatattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtga |
215 |
Q |
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| T |
2588999 |
agattcatattgattgagtagttagttttgtatcaaatcaagatattattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtga |
2588900 |
T |
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| Q |
216 |
tctgatttgcaacagcaggtactgcagcttgctcat |
251 |
Q |
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| T |
2588899 |
tctgatttgcaacagcaggtactgcagcttgctcat |
2588864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 36251274 - 36251229
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatacta |
186 |
Q |
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| T |
36251274 |
ttttatatcaattcaagatatgattcacatgtatagtaagatacta |
36251229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 27329256 - 27329329
Alignment:
| Q |
123 |
tattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgatt |
198 |
Q |
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| T |
27329256 |
tattgattgagt--ttagttttgtatcgaatcgatatacaattaacatgtatcgtaagatattgataaccatgatt |
27329329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 20920891 - 20920841
Alignment:
| Q |
180 |
gatactaataaccatgattacctgcatgaatagtgatctgatttgcaacag |
230 |
Q |
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| T |
20920891 |
gataataataaccatgattacctgtatgatgaatgatctgatttgcaacag |
20920841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14161110 - 14161058
Alignment:
| Q |
139 |
agttttgtatcaaatcaagatactattcacatgtatagtaagatactaataac |
191 |
Q |
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| T |
14161110 |
agttttgtatcgaatcaagatacgactcaaatctatagtaagatactgataac |
14161058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 41042642 - 41042586
Alignment:
| Q |
141 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgat |
197 |
Q |
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|||| |||| ||||||||||| | || ||||||| |||||||||| ||||||||||| |
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| T |
41042642 |
ttttctatcgaatcaagatacgactcgcatgtatcgtaagatactgataaccatgat |
41042586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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