View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0878_low_42 (Length: 241)
Name: NF0878_low_42
Description: NF0878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0878_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 47717802 - 47717677
Alignment:
| Q |
1 |
cacagcaagattgcaatgattgtttagagcgtgctattttagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaa |
100 |
Q |
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| T |
47717802 |
cacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaa |
47717703 |
T |
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| Q |
101 |
tattagacatgaaatctattccttct |
126 |
Q |
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| T |
47717702 |
tattagacatgaaatctattccttct |
47717677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 47745586 - 47745466
Alignment:
| Q |
6 |
caagattgcaatgattgtttagagcgtgctattttagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatatta |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||| | || |||| |||||||| |||| |||| ||||||||||| |||||| ||||||| |
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| T |
47745586 |
caagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatatta |
47745487 |
T |
|
| Q |
106 |
gacatgaaatctattccttct |
126 |
Q |
| |
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|| ||||||| |||||||||| |
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| T |
47745486 |
gatatgaaatatattccttct |
47745466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 47712996 - 47712866
Alignment:
| Q |
4 |
agcaagattgcaatgattgtttagagcgtgctattttagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatat |
103 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||||||| ||||| | | |||||||| |||| ||| |||| ||||||||||||| ||||| |
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| T |
47712996 |
agcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatat |
47712897 |
T |
|
| Q |
104 |
tagacatgaaatctattccttctctgctcct |
134 |
Q |
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|||| ||||| ||||| |||||||| |||| |
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| T |
47712896 |
tagatatgaagtctatcgcttctctgatcct |
47712866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 47759911 - 47759801
Alignment:
| Q |
4 |
agcaagattgcaatgattgtttagagcgtgctattttagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatat |
103 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| | ||| ||||| | || || |||||||||| |||| |||| |||||||||||||||||| ||||| |
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| T |
47759911 |
agcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatat |
47759812 |
T |
|
| Q |
104 |
tagacatgaaa |
114 |
Q |
| |
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||| |||||| |
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| T |
47759811 |
cagatatgaaa |
47759801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 47704943 - 47704888
Alignment:
| Q |
59 |
taataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaa |
114 |
Q |
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|||||||||| |||| || | |||| ||||||||||||||||||||||| |||||| |
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|
| T |
47704943 |
taataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaa |
47704888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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